Browse Element(s) Details


Os.53058.1.S1_at

Description gb:AK070637.1
DB_XREF= gi:32980661
TID=Os.53058.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056J01, full insert sequence.
FL= gb:AK070637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6420011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53058.1.S1_at--89--5271Chr03:36213010..36213034 (25 bp)
GAAGTACCCATTGTCGTACGTTTCG
LOC_Os03g64200
Os.53058.1.S1_at--620--6991Chr03:36212995..36213019 (25 bp)
GTACGTTTCGTTCCATGTGTATGCA
LOC_Os03g64200
Os.53058.1.S1_at--937--2091Chr03:36212822..36212846 (25 bp)
ACATCGTTTGCGGTCGGTGCGATAA
LOC_Os03g64200
Os.53058.1.S1_at--254--5771Chr03:36212796..36212820 (25 bp)
GACGATACCAGGTGTCCAAGCAGTT
LOC_Os03g64200
Os.53058.1.S1_at--474--5671Chr03:36212759..36212783 (25 bp)
GACATCTCGTCTTCAGCAAACGCAA
LOC_Os03g64200
Os.53058.1.S1_at--736--1231Chr03:36212700..36212724 (25 bp)
AGTTGGATACCGTGTTGTTCTCTAC
LOC_Os03g64200
Os.53058.1.S1_at--968--9531Chr03:36212680..36212704 (25 bp)
TCTACGTGTTGCTTCGTCTGAATGT
LOC_Os03g64200
Os.53058.1.S1_at--212--2411Chr03:36212651..36212675 (25 bp)
AAACACATGAGGTTGCTTGGCAGCT
LOC_Os03g64200
Os.53058.1.S1_at--729--9211Chr03:36212588..36212612 (25 bp)
TCCAGTAACTAGTGTGCCGTCCAAG
LOC_Os03g64200
Os.53058.1.S1_at--492--7271Chr03:36212570..36212594 (25 bp)
GTCCAAGTAGCCTCTGTCTAATGAA
LOC_Os03g64200
Os.53058.1.S1_at--774--2071Chr03:36212442..36212466 (25 bp)
ACATATGCCGTACTGTGTCTGTCTA
LOC_Os03g64200
Target Sequence 
GAAGTACCCATTGTCGTACGTTTCGTTCCATGTGTATGCAGTTGAGGGTTTGCTTGAGAACGAGTATGTGGGCACATCGT
TTGCGGTCGGTGCGATAAGGACGATACCAGGTGTCCAAGCAGTTGGGGGCTCATACGACATCTCGTCTTCAGCAAACGCA
AAGTGGGTAAATCTGCTGGTTTTGTTTGTGANGGCAGTTGGATACCGTGTTGTTCTCTACGTGTTGCTTCGTCTGAATGT
AAGGAAACACATGAGGTTGCTTGGCAGCTGGTGCTGCTGGAGCTGGACACCGCAAAGTGACTACTACTCCAGTAACTAGT
GTGCCGTCCAAGTAGCCTCTGTCTAATGAATGAATCCAGGTGACTCAACTGACTCCTCGTCTGCCATGTACCATCATGTA
GAGTACAAGGGGGCGAAATGCATGCACATGTATATTCATTCTTGATCATGCTTACATATGCCGTACTGTGTCTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis