Browse Element(s) Details


Os.53080.1.S1_at

Description gb:AK070735.1
DB_XREF= gi:32980758
TID=Os.53080.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059H15, full insert sequence.
FL= gb:AK070735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2967010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53080.1.S1_at--402--6331Chr10:15101544..15101568 (25 bp)
GATGCAAGATGCGACTAGCTGAAAA
LOC_Os10g29670
Os.53080.1.S1_at--61--5971Chr10:15101287..15101311 (25 bp)
GAGAATGTGTTCAGCACGTGCTCAA
LOC_Os10g29670
Os.53080.1.S1_at--303--2351Chr10:15100848..15100872 (25 bp)
AAAGCATACTAAGGGCGAGTTCAGT
LOC_Os10g29670
Os.53080.1.S1_at--678--5271Chr10:15100819..15100843 (25 bp)
GAATGTCTCATTCTTATTTCCATCG
LOC_Os10g29670
Os.53080.1.S1_at--31--10031Chr10:15100727..15100751 (25 bp)
TAGACACGCTTCCTGAGTTCGAGTT
LOC_Os10g29670
Os.53080.1.S1_at--411--6071NONE
GAGTTCAAGTACACCAGATAGTCAA
NONE
Os.53080.1.S1_at--56--9832Chr10:15099115..15099139 (25 bp)
TAAACTACTGCAATCACCTTTTTTC
LOC_Os10g29670
Os.53080.1.S1_at--326--3572Chr10:15099076..15099100 (25 bp)
CATCAAAGTTATTCTCTCCTAGGCC
LOC_Os10g29670
Os.53080.1.S1_at--878--3751Chr10:15099063..15099087 (25 bp)
CTCTCCTAGGCCCAATTCAGTTAGG
LOC_Os10g29670
Os.53080.1.S1_at--613--10092Chr10:15099042..15099066 (25 bp)
TAGGCCTGACAATTTGCCAACCCAT
LOC_Os10g29670
Os.53080.1.S1_at--747--7712Chr10:15098954..15098978 (25 bp)
GGTAATTTCCCTGACAAACTGTTTG
LOC_Os10g29670
Target Sequence 
GATGCAAGATGCGACTAGCTGAAAACAAGGACAACGAGAAGTAAGTATAGGTAATCAGGTTGCTGTGGAGGGAAAAGGCA
GCAGTGATGGAGGTGATGAAGGAATCAGTACGGAGGAAGAGAGAATGTGTTCAGCACGTGCTCAATGCGAAAACAGAGAT
GGCCAGTTGGGGAAACTAAAGTTTCATTTGCAAAGCATACTAAGGGCGAGTTCAGTATTAGAATGTCTCATTCTTATTTC
CATCGCCGCTGCCTCTCATCTCCACCACCATTGCCACCTCCACGCCTCTCCACCAGCGCCCCATCCTCCATCTAGACACG
CTTCCTGAGTTCGAGTTCAAGTACACCAGATAGTCAACTGAAGAGAATAAACTACTGCAATCACCTTTTTTCAGGAACAT
CACTTTCATCAAAGTTATTCTCTCCTAGGCCCAATTCAGTTAGGCCTGACAATTTGCCAACCCATATTGTAAATGGTCCA
TAAAAAGCATTTGTTGATATAGTATTTTGAGCAAATGTTGAAAGATCAGGTAATTTCCCTGACAAACTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis