Browse Element(s) Details


Os.53094.1.S1_at

Description gb:AK070785.1
DB_XREF= gi:32980808
TID=Os.53094.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065D10, full insert sequence.
FL= gb:AK070785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein
LOC_Os06g12850OsAffx.27593.2.S1_x_at11/116+7030414..7031805hypothetical protein
LOC_Os06g12850OsAffx.27593.1.S1_x_at1/116+7030414..7031805hypothetical protein
LOC_Os06g12860OsAffx.27593.4.S1_at11/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.2.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.1.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12870Os.27436.1.A1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12870Os.27436.2.S1_s_at11/116+7042612..7044658expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53094.1.S1_at--459--1811Chr06:7019401..7019425 (25 bp)
ACCCGGGCGTGTACATCTACAAGAA
LOC_Os06g12830
Os.53094.1.S1_at--50--571Chr06:7019288..7019312 (25 bp)
ATCCTGATGCAGATGATCGCCGGCG
LOC_Os06g12830
Os.53094.1.S1_at--1068--4031Chr06:7019189..7019213 (25 bp)
CGTTGCATGGTCTCTGCGTCTGCGT
LOC_Os06g12830
Os.53094.1.S1_at--79--6451Chr06:7019156..7019180 (25 bp)
GATCAGATCACGAGAATCCGAAGCT
LOC_Os06g12830
Os.53094.1.S1_at--613--5411Chr06:7019137..7019161 (25 bp)
GAAGCTGTCGGTTTTGTTCTGACTG
LOC_Os06g12830
Os.53094.1.S1_at--1027--6711Chr06:7019122..7019146 (25 bp)
GTTCTGACTGGTTCTTGAATCCTGA
LOC_Os06g12830
Os.53094.1.S1_at--59--5271Chr06:7019110..7019130 (21 bp)
GAATCCTGACAATTGACTTTGATGG
LOC_Os06g12830
Os.53094.1.S1_at--850--8191Chr06:7018943..7018967 (25 bp)
GGAATGTTCTTCTGCCAATGGGATT
LOC_Os06g12830
Os.53094.1.S1_at--639--7671Chr06:7018924..7018948 (25 bp)
GGGATTCAGAATCGCAGTTTGCAGA
LOC_Os06g12830
Os.53094.1.S1_at--166--2591Chr06:7018896..7018920 (25 bp)
AACGTGTGCTGACTTCAATCTCGAT
LOC_Os06g12830
Os.53094.1.S1_at--53--8251Chr06:7018861..7018885 (25 bp)
GGCACAGTGTACAATGGTCTATTTC
LOC_Os06g12830
Target Sequence 
ACCCGGGCGTGTACATCTACAAGAACGCCTACGGCGGCGGCCCGGTGCCGGAGACGGCGGCGAACGACTGCCTGCACTGG
TGCGCGCCGGGGCCGGTCGACACGTTCAACGACATCCTGATGCAGATGATCGCCGGCGGCTAGCTGGCCGCCGCCGCCCG
CCGTCGTCGAGCTCGATCCGGCACGTGCGGCGCGGTGTGTCGCCGCACGCCGCGTTGCATGGTCTCTGCGTCTGCGTGGA
TGGTGGATCAGATCACGAGAATCCGAAGCTGTCGGTTTTGTTCTGACTGGTTCTTGAATCCTGACAATTGACTTTGATGG
AGGGAATGTTCTTCTGCCAATGGGATTCAGAATCGCAGTTTGCAGATGCAACGTGTGCTGACTTCAATCTCGATGCCATT
GATTGGCACAGTGTACAATGGTCTATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis