Browse Element(s) Details


Os.53099.1.S1_at

Description gb:AK070818.1
DB_XREF= gi:32980841
TID=Os.53099.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068B12, full insert sequence.
FL= gb:AK070818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1106011/11GHMP kinases putative ATP-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53099.1.S1_at--604--7331Chr11:6108596..6108620 (25 bp)
GTGCAGCGAATCCAAGTCGCGCCAT
LOC_Os11g11060
Os.53099.1.S1_at--574--9751Chr11:6108643..6108667 (25 bp)
TAATCCTCCTTTCTAATCTGTTCTC
LOC_Os11g11060
Os.53099.1.S1_at--909--3051Chr11:6108657..6108681 (25 bp)
AATCTGTTCTCGACTTCTTGTTTAC
LOC_Os11g11060
Os.53099.1.S1_at--943--8552Chr11:6108907..6108931 (25 bp)
TGGAGGGAGTATTTCTCAGCTCTTT
LOC_Os11g11060
Os.53099.1.S1_at--999--9651Chr11:6108922..6108946 (25 bp)
TCAGCTCTTTTGTTATCATTCATAC
LOC_Os11g11060
Os.53099.1.S1_at--203--9531Chr11:6108958..6108982 (25 bp)
TCTCTTGCTTTGAATCCTCCATGAA
LOC_Os11g11060
Os.53099.1.S1_at--758--10491Chr11:6108993..6109017 (25 bp)
TTAATATCCTCTTGTCGAGCCTCTT
LOC_Os11g11060
Os.53099.1.S1_at--891--10291Chr11:6109019..6109043 (25 bp)
TTTCTCCCCAAATCCTGATGACAAT
LOC_Os11g11060
Os.53099.1.S1_at--981--10251Chr11:6109078..6109102 (25 bp)
TTTGTTTTATTTACGACTCCTGAAG
LOC_Os11g11060
Os.53099.1.S1_at--290--5951Chr11:6109110..6109134 (25 bp)
GAGCACACTAGTTCAGTTTCATACA
LOC_Os11g11060
Os.53099.1.S1_at--577--111Chr11:6109147..6109171 (25 bp)
ATTACTACTGTTCACCATCGATTAA
LOC_Os11g11060
Target Sequence 
GTGCAGCGAATCCAAGTCGCGCCATCACCGCTACCGCTCACGGAGGGTAATCCTCCTTTCTAATCTGTTCTCGACTTCTT
GTTTACTCCCTCCTTCCCTAAATGTTTGACGCTGTTGACTTTTTNAAACATTTTTGACCATTCGTCTTATTCAAAATTTT
TTATAAAATGTGTAAAACTATATGTATATATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAGAATTAATAATT
ACTTAAATTTTTCAAATAAGACGAACGGTCAAACATTTTAAAAAAGGTCAACGGTGTCAAACATTTTGGGATGGAGGGAG
TATTTCTCAGCTCTTTTGTTATCATTCATACATTATACATACTCTCTTGCTTTGAATCCTCCATGAAGGCACAGAACTTA
ATATCCTCTTGTCGAGCCTCTTTTTTCTCCCCAAATCCTGATGACAATAAGTCANCATCTTGCTTTCAATTAAGTGACTG
AGTTTGTTTTATTTACGACTCCTGAAGGAGATAAGAGCACACTAGTTCAGTTTCATACACGAGAATGTAATATTACTACT
GTTCACCATCGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis