Browse Element(s) Details


Os.53114.1.S1_at

Description gb:AK070883.1
DB_XREF= gi:32980906
TID=Os.53114.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063M21, full insert sequence.
FL= gb:AK070883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4861011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48580NANA7+29083200..29084333retrotransposon protein, putative, LINE subclass
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53114.1.S1_at--1014--2331Chr07:29109511..29109531 (21 bp)
AAAGAGGGATGTGGACTTTCTGCTG
LOC_Os07g48610
Os.53114.1.S1_at--343--9491Chr07:29109525..29109549 (25 bp)
TCTGCTGGGTGATCTGACGAAGCAC
LOC_Os07g48610
Os.53114.1.S1_at--976--1871Chr07:29109571..29109595 (25 bp)
ACGATGCACAACGTCATCTGCGGTG
LOC_Os07g48610
Os.53114.1.S1_at--693--1591Chr07:29109731..29109755 (25 bp)
AGCTCCGACTCATGGAAGGCTGCGA
LOC_Os07g48610
Os.53114.1.S1_at--155--5851Chr07:29109754..29109778 (25 bp)
GACCACAAGACGGTGGTTTTCGGCA
LOC_Os07g48610
Os.53114.1.S1_at--256--971Chr07:29109797..29109821 (25 bp)
AGGAGCTCAGAGCATTCTGGTCCGC
LOC_Os07g48610
Os.53114.1.S1_at--2--8611Chr07:29109814..29109838 (25 bp)
TGGTCCGCGTCTCATCAGAATAAGC
LOC_Os07g48610
Os.53114.1.S1_at--1049--5971Chr07:29109932..29109956 (25 bp)
GAGAAATTCAGTCCACACTTTGAAA
LOC_Os07g48610
Os.53114.1.S1_at--707--10071Chr07:29109990..29110014 (25 bp)
TAGGGTGAATCCATCGACACGTTTC
LOC_Os07g48610
Os.53114.1.S1_at--178--511Chr07:29110002..29110026 (25 bp)
ATCGACACGTTTCTTTCGTCAGAAC
LOC_Os07g48610
Os.53114.1.S1_at--588--9551Chr07:29110013..29110037 (25 bp)
TCTTTCGTCAGAACAGTGTCCGTAT
LOC_Os07g48610
Target Sequence 
AAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCACCACTCGGCGTGGCACACGATGCACAACGTCA
TCTGCGGTGGGGCCATGCTGCAGGACAGGAACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGC
GGCGACGATCAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTCCGACTCATGGA
AGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCTGAGGAGCTCAGAGCATTCTGGTCCGCGTCTC
ATCAGAATAAGCAGCTAGCAGCATCTGCATCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTC
TGATATGAAATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTTTAGAGATTAAA
GACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis