Browse Element(s) Details


Os.53161.1.S1_x_at

Description gb:AK071111.1
DB_XREF= gi:32981134
TID=Os.53161.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033134M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078B01, full insert sequence.
FL= gb:AK071111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3471011/11Peroxidase 27 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53161.1.S1_x_at--485--6371Chr07:20802745..20803152 (25 bp)
GATCCTATCAGGTGCTCACGCCATA
LOC_Os07g34710
Os.53161.1.S1_x_at--106--1051Chr07:20803137..20803161 (25 bp)
AGGTGCTCACGCCATAGGCAATTCA
LOC_Os07g34710
Os.53161.1.S1_x_at--711--10071Chr07:20803151..20803175 (25 bp)
TAGGCAATTCACACTGCGTCTCCTT
LOC_Os07g34710
Os.53161.1.S1_x_at--314--5611Chr07:20803279..20803303 (25 bp)
GACAACGCGACCACCGTCGAGATGG
LOC_Os07g34710
Os.53161.1.S1_x_at--1098--8071Chr07:20803310..20803334 (25 bp)
GGAGCTCGACGACGTTCGACACCGA
LOC_Os07g34710
Os.53161.1.S1_x_at--502--6711Chr07:20803323..20803347 (25 bp)
GTTCGACACCGACTACTACAGGCTG
LOC_Os07g34710
Os.53161.1.S1_x_at--1115--2011Chr07:20803334..20803358 (25 bp)
ACTACTACAGGCTGGTGGCGAGCCG
LOC_Os07g34710
Os.53161.1.S1_x_at--326--1731Chr07:20803379..20803403 (25 bp)
ACCAGGCGTTGCTCCAGGACAGGGA
LOC_Os07g34710
Os.53161.1.S1_x_at--533--911Chr07:20803441..20803465 (25 bp)
AGGCAGGCGTTCTTCCGGCGATTCG
LOC_Os07g34710
Os.53161.1.S1_x_at--1129--1951Chr07:20803532..20803556 (25 bp)
ACTGTGCTCTGATTAATTGATGGGC
LOC_Os07g34710
Os.53161.1.S1_x_at--187--8871Chr07:20803602..20803626 (25 bp)
TGATGTTCTATTGTTTGGTGTCTAA
LOC_Os07g34710
Target Sequence 
GATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGG
GCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCG
ACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCT
CTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGG
CGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGG
AAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGT
TCTATTGTTTGGTGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53161.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis