Browse Element(s) Details


Os.5318.1.S1_a_at

Description gb:AK061555.1
DB_XREF= gi:32971573
TID=Os.5318.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0027L23.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C05, full insert sequence.
FL= gb:AK099195.1 gb:AK061555.1 gb:AK104496.1 gb:AK104125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4261011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5318.1.S1_a_at--79--511Chr10:22634962..22634986 (25 bp)
ATCGAGACACGATCCATCCTGGTGT
LOC_Os10g42610
Os.5318.1.S1_a_at--906--4451Chr10:22634929..22634953 (25 bp)
GCCTGCCTGCGCTTGTACAAATTAA
LOC_Os10g42610
Os.5318.1.S1_a_at--213--151Chr10:22634905..22634929 (25 bp)
ATTACTAGCACATCGATCCTTGCTC
LOC_Os10g42610
Os.5318.1.S1_a_at--975--1171Chr10:22634851..22634875 (25 bp)
AGTAGCTAGCGCCTTCTTGATGATG
LOC_Os10g42610
Os.5318.1.S1_a_at--439--8491Chr10:22634820..22634844 (25 bp)
TGGCTACATCCATCGTCAATACACA
LOC_Os10g42610
Os.5318.1.S1_a_at--205--1351Chr10:22634781..22634805 (25 bp)
AGAGATCAATTCAACTGCAGTGCAA
LOC_Os10g42610
Os.5318.1.S1_a_at--653--5351Chr10:22634719..22634743 (25 bp)
GAAGATGCAAATCAGGCCGCCGAGC
LOC_Os10g42610
Os.5318.1.S1_a_at--155--3371Chr10:22634685..22634709 (25 bp)
CAGCTCAGTTCAAGTGCGGACGGAC
LOC_Os10g42610
Os.5318.1.S1_a_at--422--8551Chr10:22634657..22634681 (25 bp)
TGGATGATTCATCCACACCGTACCA
LOC_Os10g42610
Os.5318.1.S1_a_at--352--1791Chr10:22634641..22634665 (25 bp)
ACCGTACCACACTTTGCACATGGAT
LOC_Os10g42610
Os.5318.1.S1_a_at--260--1732Chr10:22634615..22634639 (25 bp)
ACCAGACTTGTTGCTTCTTTATGTA
LOC_Os10g42610
Target Sequence 
ATCGAGACACGATCCATCCTGGTGTGCCTGCCTGCCTGCCTGCGCTTGTACAAATTAATTACTAGCACATCGATCCTTGC
TCCATCAGTTTGCTTCTTCTGTACATACTCCAGTAGCTAGCGCCTTCTTGATGATGGATCGTTGGCTACATCCATCGTCA
ATACACACACTGATGAACACCAGAGATCAATTCAACTGCAGTGCAAGCCAGGGCGCGCGGCGGCGAGCAGATCGAGCAAT
TTGGAAGATGCAAATCAGGCCGCCGAGCAGAGCAGAGCAGCTCAGTTCAAGTGCGGACGGACGGCTGGATGATTCATCCA
CACCGTACCACACTTTGCACATGGATAACCAGACTTGTTGCTTCTTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5318.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis