Browse Element(s) Details


Os.53182.1.S1_at

Description gb:AK071233.1
DB_XREF= gi:32981256
TID=Os.53182.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082A13, full insert sequence.
FL= gb:AK071233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1995011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53182.1.S1_at--229--8391Chr09:11942663..11942687 (25 bp)
GGCGACCAAGAGCAATACCTCGTCA
LOC_Os09g19950
Os.53182.1.S1_at--299--2931Chr09:11942687..11942711 (25 bp)
AAGGACGAGGCACTAGCTGCGCAAC
LOC_Os09g19950
Os.53182.1.S1_at--1108--4071Chr09:11942718..11942742 (25 bp)
CGCAACAACCCTACGAGTACTTGAA
LOC_Os09g19950
Os.53182.1.S1_at--184--6051Chr09:11942732..11942756 (25 bp)
GAGTACTTGAACTACGGGACGGCCG
LOC_Os09g19950
Os.53182.1.S1_at--424--811Chr09:11942822..11942846 (25 bp)
ATGGGTTTGAGCGATCAGCTCCAGC
LOC_Os09g19950
Os.53182.1.S1_at--114--391Chr09:11942835..11942859 (25 bp)
ATCAGCTCCAGCAGTGCCAGATCGG
LOC_Os09g19950
Os.53182.1.S1_at--881--4511Chr09:11942866..11942890 (25 bp)
GCCGCCGTTCGATGTGAAGCCTGAG
LOC_Os09g19950
Os.53182.1.S1_at--1074--1931Chr09:11942910..11942934 (25 bp)
ACGGCGGTAGCGTGTTCGTCGAACA
LOC_Os09g19950
Os.53182.1.S1_at--372--7231Chr09:11942927..11942951 (25 bp)
GTCGAACAGCCGGAGCAGAAGATTC
LOC_Os09g19950
Os.53182.1.S1_at--107--91Chr09:11942988..11943012 (25 bp)
ATTGCCAGCTGGAGCTTGGGTGCTC
LOC_Os09g19950
Os.53182.1.S1_at--662--10831Chr09:11943003..11943027 (25 bp)
TTGGGTGCTCTTCTAATGCTTGGAA
LOC_Os09g19950
Target Sequence 
GGCGACCAAGAGCAATACCTCGTCAAGGACGAGGCACTAGCTGCGCAACCGCCGCCGCAACAACCCTACGAGTACTTGAA
CTACGGGACGGCCGGCGACGAGGGCAGCAGCCACGCCTGGTACACCGGCAACGGCGGCGACGCCGACGCCTCGCCGCCGA
TGGGTTTGAGCGATCAGCTCCAGCAGTGCCAGATCGGGGCCGCGCCGCCGTTCGATGTGAAGCCTGAGCTGCCGGCGACG
ATGGAACACGGCGGTAGCGTGTTCGTCGAACAGCCGGAGCAGAAGATTCTGCCGGCGGCAGGGTCGTCGTCGTCGGCGGC
GGCGCATTGCCAGCTGGAGCTTGGGTGCTCTTCTAATGCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis