Browse Element(s) Details


Os.53184.1.S1_at

Description gb:AK071256.1
DB_XREF= gi:32981279
TID=Os.53184.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082L22, full insert sequence.
FL= gb:AK071256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1092011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53184.1.S1_at--497--10251Chr03:5589497..5589521 (25 bp)
TTTGGTGACCTTTTGATGGGCTCAT
LOC_Os03g10920
Os.53184.1.S1_at--518--2151Chr03:5589451..5589475 (25 bp)
ACAGCAGCTTGCGAGGTTCTACCAT
LOC_Os03g10920
Os.53184.1.S1_at--949--7892Chr07:3471789..3471808 (20 bp)
GGTTCTACCATTTTTGCCTGCATAG
NONE
Os.53184.1.S1_at--836--4471Chr03:5589422..5589446 (25 bp)
GCCTGCATAGCTCATATAACTGGTG
LOC_Os03g10920
Os.53184.1.S1_at--609--1951Chr03:5589363..5589387 (25 bp)
ACTGGAGCAGCTTATCGCATTGACT
LOC_Os03g10920
Os.53184.1.S1_at--652--3371Chr03:5589259..5589283 (25 bp)
CACCATGGCCTGTTGACATATGCAA
LOC_Os03g10920
Os.53184.1.S1_at--1097--5571Chr03:5589181..5589205 (25 bp)
GAAATATATCTTCTGAACCCCTCAT
LOC_Os03g10920
Os.53184.1.S1_at--888--2231Chr03:5589091..5589115 (25 bp)
ACAATCAGAAGCTAGCCCGGGCTAT
LOC_Os03g10920
Os.53184.1.S1_at--870--3951Chr03:5589074..5589098 (25 bp)
CGGGCTATCCGGCTCTAGAATTAGA
LOC_Os03g10920
Os.53184.1.S1_at--841--591Chr03:5589043..5589067 (25 bp)
ATGCCTCTGGCATTACGTTTGTTAG
LOC_Os03g10920
Os.53184.1.S1_at--734--2391Chr03:5588967..5588991 (25 bp)
AAACTTCTGCACTGTTCGCGTGTTA
LOC_Os03g10920
Target Sequence 
TTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTG
CATAGCTCATATAACTGGTGTTGAACAGGCANCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTG
TACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCA
CCATGGCCTGTTGACATATGCAACACNGTGTAGGGCCCGCTTTGGAAAGNTGGAAGAGTGGTGGAATTTCCTTTGTGAAA
TATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAAT
TGCCACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGG
CTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGTTCGCGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis