Browse Element(s) Details


Os.53210.1.S1_at

Description gb:AK071366.1
DB_XREF= gi:32981389
TID=Os.53210.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096D05, full insert sequence.
FL= gb:AK071366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2676010/11Dehydrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26720OsAffx.7212.1.S1_at11/1111+14801716..14804775hypothetical protein
LOC_Os11g26720Os.53874.1.S1_at1/1111+14801716..14804775hypothetical protein
LOC_Os11g26730OsAffx.19031.1.S1_at11/1111+14816284..14817059hypothetical protein
LOC_Os11g26730OsAffx.23391.1.S1_at1/1111+14816284..14817059hypothetical protein
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed
LOC_Os11g26760Os.53210.1.S1_at10/1111+14827503..14828391Dehydrin family protein, expressed
LOC_Os11g26770OsAffx.30910.1.S1_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.1.S1_x_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.18770.1.S1_s_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.2.S1_at2/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26780Os.51718.1.S1_at11/1111+14835926..14836892Dehydrin RAB 16B, putative, expressed
LOC_Os11g26790Os.12633.1.S1_s_at11/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26790Os.12633.1.S1_at10/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26800OsAffx.31144.1.S1_at11/1111+14844504..14847674hypothetical protein
LOC_Os11g26800OsAffx.9043.3.S1_at1/1111+14844504..14847674hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009414biological_processresponse to water deprivation
GO:0009415biological_processresponse to water
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009961biological_processresponse to 1-aminocyclopropane-1-carboxylic acid
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53210.1.S1_at--82--5071Chr11:14827707..14827731 (25 bp)
GCACTAAATAAGCTCGACCGGGTCG
LOC_Os11g26760
Os.53210.1.S1_at--1053--5811Chr11:14827692..14827716 (25 bp)
GACCGGGTCGTCACCAAATATGTCG
LOC_Os11g26760
Os.53210.1.S1_at--530--271Chr11:14827675..14827699 (25 bp)
ATATGTCGTGATGTACGTGCAGTTT
LOC_Os11g26760
Os.53210.1.S1_at--1158--3991Chr11:14827660..14827684 (25 bp)
CGTGCAGTTTTATATGTTGTTGAAT
LOC_Os11g26760
Os.53210.1.S1_at--360--3031Chr11:14827623..14827647 (25 bp)
AATGCGAGTGATGGTGTCTTCTGCC
LOC_Os11g26760
Os.53210.1.S1_at--777--811Chr11:14827613..14827637 (25 bp)
ATGGTGTCTTCTGCCTTGGGACGGA
LOC_Os11g26760
Os.53210.1.S1_at--777--9492Chr03:17338502..17338521 (20 bp)
TCTGCCTTGGGACGGATGACACATT
NONE
Os.53210.1.S1_at--919--2071Chr11:14827584..14827608 (25 bp)
ACATTGTCTGTTGTGTTCTCGCGTC
LOC_Os11g26760
Os.53210.1.S1_at--170--8671Chr11:14827573..14827597 (25 bp)
TGTGTTCTCGCGTCCGTGTCGGTTT
LOC_Os11g26760
Os.53210.1.S1_at--716--7471Chr11:14827526..14827550 (25 bp)
GTGTGTACACACTAAGGTTTTATTG
LOC_Os11g26760
Os.53210.1.S1_at--63--9011Chr11:14827503..14827527 (25 bp)
TGAAGTGTGACTTTGTGCTTGTGTT
NONE
Target Sequence 
GCACTAAATAAGCTCGACCGGGTCGTCACCAAATATGTCGTGATGTACGTGCAGTTTTATATGTTGTTGAATAAACTAGC
GNGAAATGCGAGTGATGGTGTCTTCTGCCTTGGGACGGATGACACATTGTCTGTTGTGTTCTCGCGTCCGTGTCGGTTTT
ACCCTTGAAATGTAATATGGTGTGTGTACACACTAAGGTTTTATTGAAGTGTGACTTTGTGCTTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis