Browse Element(s) Details


Os.53224.1.S1_at

Description gb:AK071452.1
DB_XREF= gi:32981475
TID=Os.53224.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091J01, full insert sequence.
FL= gb:AK071452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2647011/11sucrose transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26430OsAffx.30543.1.S1_at11/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_x_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009915biological_processphloem loading
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53224.1.S1_at--440--1091Chr10:13450588..13450612 (25 bp)
AGTGGGAGCCGCAAAAGCTCGTTGA
LOC_Os10g26470
Os.53224.1.S1_at--543--1551Chr10:13450603..13450627 (25 bp)
AGCTCGTTGAGTTAACTTCGTTGGA
LOC_Os10g26470
Os.53224.1.S1_at--180--5371Chr10:13450626..13450650 (25 bp)
GAAGAACCCTATAGTTTCTCCTTCT
LOC_Os10g26470
Os.53224.1.S1_at--1105--271Chr10:13450636..13450660 (25 bp)
ATAGTTTCTCCTTCTGTGGGCTCTT
LOC_Os10g26470
Os.53224.1.S1_at--279--8271Chr10:13450670..13450694 (25 bp)
GGCAGGCCCTGTAAATAACTCTTTT
LOC_Os10g26470
Os.53224.1.S1_at--508--9011Chr10:13450732..13450756 (25 bp)
TGCAAGGTAAAGCTTTCGTCTTTTT
LOC_Os10g26470
Os.53224.1.S1_at--898--9791Chr10:13450965..13450989 (25 bp)
TAAGCTGCTCGATCACTGACAGTGA
LOC_Os10g26470
Os.53224.1.S1_at--542--2251Chr10:13451038..13451062 (25 bp)
AAATTTCAGGATTCGGACTCGCTAA
LOC_Os10g26470
Os.53224.1.S1_at--558--3051Chr10:13451061..13451085 (25 bp)
AATCGAGCGACTTAATCCATCCAGG
LOC_Os10g26470
Os.53224.1.S1_at--506--3551Chr10:13451071..13451095 (25 bp)
CTTAATCCATCCAGGGTTTACAGGG
LOC_Os10g26470
Os.53224.1.S1_at--202--2211Chr10:13451156..13451180 (25 bp)
ACAACACCGTGCAGGTATGCAGCCT
LOC_Os10g26470
Target Sequence 
AGTGGGAGCCGCAAAAGCTCGTTGAGTTAACTTCGTTGGAAGAACCCTATAGTTTCTCCTTCTGTGGGCTCTTTTTTTTT
ATGGCAGGCCCTGTAAATAACTCTTTTTTTGGTTGTTTGTTTTTTCTCCTACTCTATCAATATATGCAAGGTAAAGCTTT
CGTCTTTTTTTTTAAAAAAAAAGTGCACTATATCTAACAATTCATAAATTTAGTTAAAACTAAAGTGACTTAAAAGTTAA
AAAAACTAATAATATGAAACGGAGGTAAGTAGTTAGTTATTTGATTAACTAATTACATGACTGACAGGTGATCGTCATCG
GGTTCTCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGTAATTAAGCTGCTCGATCACTGACAGT
GACAGAGCTTGATGAATTCGCTGATTAAATCATTGGTCGATTAGTAAGCAAAATTTCAGGATTCGGACTCGCTAATCGAG
CGACTTAATCCATCCAGGGTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGA
CTTCTCCAACAACACCGTGCAGGTATGCAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis