Browse Element(s) Details


Os.53257.1.S1_at

Description gb:AK071617.1
DB_XREF= gi:32981640
TID=Os.53257.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105N04, full insert sequence.
FL= gb:AK071617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4935010/11expressed protein
LOC_Os03g131205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53257.1.S1_at--1122--552Chr07:29554883..29555012 (25 bp)
ATCCTCGCTTGGGTACAATGTTGCA
LOC_Os07g49350
Os.53257.1.S1_at--800--2991Chr07:29554867..29554891 (25 bp)
AATGTTGCACGATTGGCTTCGGGCT
LOC_Os07g49350
Os.53257.1.S1_at--290--10832Chr07:29554855..29554879 (25 bp)
TTGGCTTCGGGCTATTTCAGAGTAT
LOC_Os07g49350
Os.53257.1.S1_at--573--5971Chr03:7062331..7062351 (21 bp)
GAGAAGCCAAGCATCGACATGACAA
LOC_Os03g13120
Os.53257.1.S1_at--856--531Chr07:29554770..29554794 (25 bp)
ATCGCTGATGCGGACTATGAGGGAA
LOC_Os07g49350
Os.53257.1.S1_at--920--7612Chr07:29554695..29554719 (25 bp)
GGGAAGTCAATCTCCGATGCAGAAA
LOC_Os07g49350
Os.53257.1.S1_at--587--7611Chr07:29554621..29554645 (25 bp)
GGGAAAGTCAATCTCCGACGCAGAG
LOC_Os07g49350
Os.53257.1.S1_at--482--7191Chr07:29554581..29554605 (25 bp)
GTCGGTGTGCCTCGGAATTTACAGA
LOC_Os07g49350
Os.53257.1.S1_at--683--6512Chr07:29554542..29554566 (25 bp)
GATATCATGTTTCCTACCTGCTGAA
LOC_Os07g49350
Os.53257.1.S1_at--208--6932Chr07:29554412..29554436 (25 bp)
GTAGTGTTCCATATGGTTGCCAGAC
LOC_Os07g49350
Os.53257.1.S1_at--479--8152Chr07:29554366..29554390 (25 bp)
GGAAATGCCCTAGTTATAGTCATAT
LOC_Os07g49350
Target Sequence 
ATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACC
ATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAAG
CTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTG
AGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAAT
TTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAATG
CACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTC
CATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis