Browse Element(s) Details


Os.53285.1.S1_x_at

Description gb:AK071784.1
DB_XREF= gi:32981807
TID=Os.53285.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107N20, full insert sequence.
FL= gb:AK071784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2977011/11Endoglucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29780Os.54411.1.A1_at10/118+18176419..18179300expressed protein
LOC_Os08g29790OsAffx.30582.1.S1_s_at10/118+18180512..18181212hypothetical protein
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29830NANA8+18201514..18203261transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53285.1.S1_x_at--609--3071Chr08:18175857..18175881 (25 bp)
AATCAGATCAGCTCATTTGCCACGT
LOC_Os08g29770
Os.53285.1.S1_x_at--460--3411Chr08:18176023..18176047 (25 bp)
CAGCACAAAGTTTCCGAGGCGCATT
LOC_Os08g29770
Os.53285.1.S1_x_at--483--551Chr08:18176066..18176090 (25 bp)
ATCCCGTCGATCAAAGTTCTCAGCA
LOC_Os08g29770
Os.53285.1.S1_x_at--375--1071Chr08:18176110..18176134 (25 bp)
AGGGTTCTCATCATGGTTACCGACA
LOC_Os08g29770
Os.53285.1.S1_x_at--129--2611Chr08:18176144..18176168 (25 bp)
AACCCTAACATCCATGTCGGAGCGA
LOC_Os08g29770
Os.53285.1.S1_x_at--39--5871Chr08:18176231..18176255 (25 bp)
GAGCCAGCCACATACATCAATGCAG
LOC_Os08g29770
Os.53285.1.S1_x_at--607--371Chr08:18176246..18176270 (25 bp)
ATCAATGCAGCCTTTGTGGGTGCCT
LOC_Os08g29770
Os.53285.1.S1_x_at--734--6171Chr08:18176309..18176333 (25 bp)
GAGGAGCCTGCGGACAACTTAGAAT
LOC_Os08g29770
Os.53285.1.S1_x_at--386--6591Chr08:18176427..18176451 (25 bp)
GATTGCCTTGTAACATCAGTGCTTA
LOC_Os08g29770
Os.53285.1.S1_x_at--710--2051Chr08:18176451..18176475 (25 bp)
ACTTGTAATATATCCCAGCTCCTTA
LOC_Os08g29770
Os.53285.1.S1_x_at--956--4351Chr08:18176465..18176489 (25 bp)
CCAGCTCCTTATCAGTGTGTACAAC
LOC_Os08g29770
Target Sequence 
AATCAGATCAGCTCATTTGCCACGTCTCAGGTGGATTACATCCTGGGGAAGAACCCTCTGGGCATGTCATACATGGTAGG
GTTCAGCACAAAGTTTCCGAGGCGCATTCATCACCGTGGCTCGTCCATCCCGTCGATCAAAGTTCTCAGCAGGAAGGTCA
CCTGCAAGGAAGGGTTCTCATCATGGTTACCGACAAGCGACCCAAACCCTAACATCCATGTCGGAGCGATTGTCGGTGGA
CCAGATGGAAATGATCAGTTCAGTGACAACAGGGGGGATTCATCACACTCTGAGCCAGCCACATACATCAATGCAGCCTT
TGTGGGTGCCTGTGCTGCTGCAATGGGGCAGAAGCAGGTGGTGAAGCTGGAGGAGCCTGCGGACAACTTAGAATCAATGG
TATCAACTTACTANANAANAGGGATGCAGAAAATATATGCAAGANTAAGATCATNNTTNTGTATTCATGTGCNANTTCNA
TGTGTGAGATTGCCTTGTAACATCAGTGCTTACTTGTAATATATCCCAGCTCCTTATCAGTGTGTACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53285.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis