Browse Element(s) Details


Os.53330.1.S1_at

Description gb:AK072029.1
DB_XREF= gi:32982052
TID=Os.53330.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105G11, full insert sequence.
FL= gb:AK072029.1 gb:AK104959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53330.1.S1_at--165--9091Chr03:967546..967570 (25 bp)
TGCTCGAGTCGGTTGTTGTCACGGA
LOC_Os03g02660
Os.53330.1.S1_at--915--10771Chr03:967558..967582 (25 bp)
TTGTTGTCACGGACGAGGTCTCCGA
LOC_Os03g02660
Os.53330.1.S1_at--1068--3831Chr03:967590..967614 (25 bp)
CTGCTCGACTTCTTTGCCGAGGGAG
LOC_Os03g02660
Os.53330.1.S1_at--975--1591Chr03:967641..967665 (25 bp)
AGCTGCCCTCTCAACGATTGCGAGG
LOC_Os03g02660
Os.53330.1.S1_at--717--5891Chr03:967860..967884 (25 bp)
GAGCTGGTCGCCGACTTGGCACTTG
LOC_Os03g02660
Os.53330.1.S1_at--119--9931Chr03:967916..967940 (25 bp)
TACGTGCCGCCGATGAAGTTTCGAG
LOC_Os03g02660
Os.53330.1.S1_at--692--2791Chr03:967931..967955 (25 bp)
AAGTTTCGAGCGTGTCAGGGTGTAA
LOC_Os03g02660
Os.53330.1.S1_at--1101--10811Chr03:967960..967984 (25 bp)
TTGTGTGGACGTTAACTTGAGTGTT
LOC_Os03g02660
Os.53330.1.S1_at--825--7351Chr03:967988..968012 (25 bp)
GTGACAGGGTTTACGCCGAATCGTT
LOC_Os03g02660
Os.53330.1.S1_at--9--5171Chr03:968034..968058 (25 bp)
GCAAGAGCGGGTGCTTTCAGTCATG
LOC_Os03g02660
Os.53330.1.S1_at--1104--791Chr03:968056..968080 (25 bp)
ATGGGCTTTATGACTTTCTCAGGAT
LOC_Os03g02660
Target Sequence 
TGCTCGAGTCGGTTGTTGTCACGGACGAGGTCTCCGAGTGGCTCCTGCTCGACTTCTTTGCCGAGGGAGTGGACCGGCTC
CGGTCGTCGGCGTCCAGCTGCCCTCTCAACGATTGCGAGGAGGCGGCGCTGCTGCGCGCCGCGGGGGATTGGGCGCGCGG
CGCGGGGCAGCGGTGGGGCGTCGGGGACGTGGTGTTCTCCGGGTGGGCGGCGGTGGCGGACATGGAGCGGAGCCGGAGGT
GGATGTGCGTCGCCGAGGAGGAGCGGGACGTCGGCGCGGAGGTGGACGGGCTCGTGATGGACGCGTTGGTGGACGAGCTG
GTCGCCGACTTGGCACTTGGTGGTGCGACCACGGTAGGGGTGGAAGTGTGTACGTGCCGCCGATGAAGTTTCGAGCGTGT
CAGGGTGTAACGTTTTGTGTGGACGTTAACTTGAGTGTTAACGTGACAGGGTTTACGCCGAATCGTTCAAAAACAGGATG
TGTATGATGCAAGAGCGGGTGCTTTCAGTCATGGGCTTTATGACTTTCTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis