Browse Element(s) Details


Os.5334.2.S1_a_at

Description gb:AK100345.1
DB_XREF= gi:32985554
TID=Os.5334.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.26 (P0018C10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082H20, full insert sequence.
FL= gb:AK100345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6578011/11secondary cell wall-related glycosyltransferase family 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65760Os.34112.1.S1_at11/111+38499619..38501067retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5334.2.S1_a_at--518--6371Chr01:38528875..38528899 (25 bp)
GATCCTAGGCTGAAAACTTGCTTTG
LOC_Os01g65780
Os.5334.2.S1_a_at--296--11Chr01:38528958..38528982 (25 bp)
GAAGGAAAACCCTGTGCCGGCCACA
LOC_Os01g65780
Os.5334.2.S1_a_at--469--9951Chr01:38528985..38529009 (25 bp)
TACCGCGAGCCTCACAAGTTCATGA
LOC_Os01g65780
Os.5334.2.S1_a_at--438--6471Chr01:38529018..38529042 (25 bp)
GATAGCCCTATACCAGATACAAACT
LOC_Os01g65780
Os.5334.2.S1_a_at--967--2371Chr01:38529038..38529062 (25 bp)
AAACTTCTAAGCTCCATACATACAT
LOC_Os01g65780
Os.5334.2.S1_a_at--156--1571Chr01:38529082..38529106 (25 bp)
AGCTATGCTTAGGTTTCTCGACAAA
LOC_Os01g65780
Os.5334.2.S1_a_at--477--311Chr01:38529110..38529134 (25 bp)
ATACCTTGTGTTTGCTATCATGGCT
LOC_Os01g65780
Os.5334.2.S1_a_at--458--1991Chr01:38529143..38529167 (25 bp)
ACTCTGGCTGCTTTGATAGCTCACA
LOC_Os01g65780
Os.5334.2.S1_a_at--905--10791Chr01:38529249..38529273 (25 bp)
TTGTTGCTCGGCTGCAATAGCCTAG
LOC_Os01g65780
Os.5334.2.S1_a_at--361--9991Chr01:38529266..38529290 (25 bp)
TAGCCTAGTTCGATGTATGGTGGTT
LOC_Os01g65780
Os.5334.2.S1_a_at--59--5151Chr01:38529343..38529367 (25 bp)
GCAAACACTGCCTCATTTTGACATG
LOC_Os01g65780
Target Sequence 
GATCCTAGGCTGAAAACTTGCTTTGAGAAGTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAATCCAAGAACTC
AACGAAGGAAAACCCTGTGCCGGCCACACCTACCGCGAGCCTCACAAGTTCATGAGATGTGTAGATAGCCCTATACCAGA
TACAAACTTCTAAGCTCCATACATACATAGCAACAGCTTGTAAAGGTAGCTATGCTTAGGTTTCTCGACAAAACTATACC
TTGTGTTTGCTATCATGGCTTCGGCTCCACTCTGGCTGCTTTGATAGCTCACAATTTTTTTGGTTTTTTGGCCAATAATT
CATCAGTATAGGTAAATTTTCTGTTCATGAATTGTTTGGTCAGTCTGGGGTTGGTTGTTGCTCGGCTGCAATAGCCTAGT
TCGATGTATGGTGGTTGAACTGTTTCGGTGATAAAATCTGGAGTGACGCAACATGAGATTGCTGACCAGCAAACACTGCC
TCATTTTGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5334.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis