Browse Element(s) Details


Os.53342.1.S1_at

Description gb:AK072133.1
DB_XREF= gi:32982156
TID=Os.53342.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121C18, full insert sequence.
FL= gb:AK106683.1 gb:AK072133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2556011/11integral membrane transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53342.1.S1_at--1103--1311Chr09:15337230..15337254 (25 bp)
AGAGGCTGCAGCTCGCGAAATTCGC
LOC_Os09g25560
Os.53342.1.S1_at--383--4151Chr09:15337243..15337267 (25 bp)
CGCGAAATTCGCTGATCACGTCGAC
LOC_Os09g25560
Os.53342.1.S1_at--744--6431Chr09:15337297..15337321 (25 bp)
GATCATACGACATTGTTGCAGCGCG
LOC_Os09g25560
Os.53342.1.S1_at--1156--6651Chr09:15337311..15337335 (25 bp)
GTTGCAGCGCGTTCTTGCATGCATC
LOC_Os09g25560
Os.53342.1.S1_at--931--631Chr09:15337329..15337353 (25 bp)
ATGCATCCTGTCACTGTCAGGTGAG
LOC_Os09g25560
Os.53342.1.S1_at--445--4871Chr09:15337360..15337384 (25 bp)
GCTATAGTAGCTCTGATCAATCGAT
LOC_Os09g25560
Os.53342.1.S1_at--520--6651Chr09:15337396..15337420 (25 bp)
GTTGATTCGTTCATGGCGAGCGCAT
LOC_Os09g25560
Os.53342.1.S1_at--170--5891Chr09:15337413..15337437 (25 bp)
GAGCGCATGCATGTCTCTGATGAGA
LOC_Os09g25560
Os.53342.1.S1_at--585--691Chr09:15337432..15337456 (25 bp)
ATGAGACGTTGCCAGGTGACAGAAA
LOC_Os09g25560
Os.53342.1.S1_at--829--851Chr09:15337456..15337480 (25 bp)
ATGGCATCTCTCTCTGTACGGGCAA
LOC_Os09g25560
Os.53342.1.S1_at--565--6271Chr09:15337504..15337528 (25 bp)
GATGTACGGATTCTGTTTTCTGTTC
LOC_Os09g25560
Target Sequence 
AGAGGCTGCAGCTCGCGAAATTCGCTGATCACGTCGACGACGACGACGACGACGACTGAACATAGTTGATCATACGACAT
TGTTGCAGCGCGTTCTTGCATGCATCCTGTCACTGTCAGGTGAGGATGCAGCTATAGTAGCTCTGATCAATCGATCAGAT
AGATTCGTTGATTCGTTCATGGCGAGCGCATGCATGTCTCTGATGAGACGTTGCCAGGTGACAGAAATGGCATCTCTCTC
TGTACGGGCAACCCGGAGTGGAAAGATGAGCTGGGATGTACGGATTCTGTTTTCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis