Browse Element(s) Details


Os.53344.1.S1_at

Description gb:AK072160.1
DB_XREF= gi:32982183
TID=Os.53344.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130K19, full insert sequence.
FL= gb:AK072160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0432010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04290Os.35344.3.S1_x_at10/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290Os.35344.18.S1_x_at9/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.2.S1_s_at8/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.3.S1_x_at6/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.5.S1_x_at3/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.1.S1_s_at2/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os03g04310Os.5860.1.S1_at11/113+1962636..1964778basic helix-loop-helix, putative, expressed
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53344.1.S1_at--322--2631Chr03:1970154..1970178 (25 bp)
AACCTGTAGGCTGTCGAGGATCCAA
LOC_Os03g04320
Os.53344.1.S1_at--727--51Chr03:1970130..1970154 (25 bp)
ATTGTTGCTGCTGGGAACACTGCTG
LOC_Os03g04320
Os.53344.1.S1_at--397--2271Chr03:1970095..1970119 (25 bp)
AAATCAGATTCCTTTTGCAGCGTTG
LOC_Os03g04320
Os.53344.1.S1_at--402--2891Chr03:1969964..1969988 (25 bp)
AAGGGTTCAGACTTCTCACTTCAGA
LOC_Os03g04320
Os.53344.1.S1_at--998--5251Chr03:1969939..1969963 (25 bp)
GAATCCACATCTTTTCTTTCAGACT
LOC_Os03g04320
Os.53344.1.S1_at--794--5911Chr03:1969911..1969935 (25 bp)
GAGCTTCGGCCTTTTGGAGTGGTTC
LOC_Os03g04320
Os.53344.1.S1_at--862--6471Chr03:1969879..1969903 (25 bp)
GATATCCAGGTAGGCGTCGTAGCTA
LOC_Os03g04320
Os.53344.1.S1_at--1052--5931Chr03:1969839..1969863 (25 bp)
GAGCAGCTTTCAGCACCTTGTGTGA
LOC_Os03g04320
Os.53344.1.S1_at--76--1751Chr03:1969825..1969849 (25 bp)
ACCTTGTGTGACTATCGACTCGTGG
LOC_Os03g04320
Os.53344.1.S1_at--839--10231Chr03:1969723..1969747 (25 bp)
TATTGGCAACATGGCATCTCCTGTG
LOC_Os03g04320
Os.53344.1.S1_at--856--6691Chr03:1969674..1969698 (25 bp)
GTTCCATCTCGAGTTTTTGGCCATG
NONE
Target Sequence 
AACCTGTAGGCTGTCGAGGATCCAATTGTTGCTGCTGGGAACACTGCTGTGTTCGTAAGAAATCAGATTCCTTTTGCAGC
GTTGAGACCCTGAGAAATGAATGCAAAAAGGGAATAACCTGCATGCTCGAGGAGATTCTTGCAGGACAGGCTGAGGTTGA
ATTTTTCTGCAGGCAATGAGTCGCTTGCAGAAGGGTTCAGACTTCTCACTTCAGAGAATCCACATCTTTTCTTTCAGACT
GAAGAGCTTCGGCCTTTTGGAGTGGTTCTGATGTCGATATCCAGGTAGGCGTCGTAGCTACCTCGGAGCATAGCAGAGCA
GCTTTCAGCACCTTGTGTGACTATCGACTCGTGGTCGTGGAATCCATCCATCCATACTGTAGGAGATTGGTGAAAAAGTG
ACGTGGGTCACGGAGCAGCCGCTGATGGATATATTGGCAACATGGCATCTCCTGTGCAACGTGAAGTACTGAAACTATGT
GTTCCATCTCGAGTTTTTGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis