Browse Element(s) Details


Os.5335.1.S1_at

Description gb:AK101209.1
DB_XREF= gi:32986418
TID=Os.5335.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031A06, full insert sequence.
FL= gb:AK101209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4945011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042752biological_processregulation of circadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5335.1.S1_at--574--7851Chr04:29282393..29282417 (25 bp)
GGTACCTTCTCCAGATTCAAGAAAA
LOC_Os04g49450
Os.5335.1.S1_at--897--5491Chr04:29282373..29282397 (25 bp)
GAAAATGTGTGAGCCCAGGTTCCAA
LOC_Os04g49450
Os.5335.1.S1_at--901--891Chr04:29282344..29282368 (25 bp)
AGGCGAGGCTTTGTGCCGTACAAGA
LOC_Os04g49450
Os.5335.1.S1_at--552--9111Chr04:29282295..29282319 (25 bp)
TGCTGAAGTCACAGGCGCCTCAGGA
LOC_Os04g49450
Os.5335.1.S1_at--803--10231Chr04:29282230..29282254 (25 bp)
TTTGGAGCCTCGTAGATCACTGCAA
LOC_Os04g49450
Os.5335.1.S1_at--608--7571Chr04:29282143..29282167 (25 bp)
GGGCTGCTTTCCTGTTACAAGAGGC
LOC_Os04g49450
Os.5335.1.S1_at--419--8971Chr04:29282114..29282138 (25 bp)
TGAAACCGCGTTAGTACTCCACAAA
LOC_Os04g49450
Os.5335.1.S1_at--693--111Chr04:29282044..29282068 (25 bp)
ATTCTATGTTTCCATTTTCCTCGTC
LOC_Os04g49450
Os.5335.1.S1_at--1104--10451Chr04:29282028..29282052 (25 bp)
TTCCTCGTCGTGTGTTTGTAATTTC
LOC_Os04g49450
Os.5335.1.S1_at--313--10811Chr04:29282013..29282037 (25 bp)
TTGTAATTTCGCTCCCATTGCGGGA
LOC_Os04g49450
Os.5335.1.S1_at--370--6151Chr04:29281981..29282005 (25 bp)
GAGGTCAATGGCTGTCATGCAATGA
LOC_Os04g49450
Target Sequence 
GGTACCTTCTCCAGATTCAAGAAAATGTGTGAGCCCAGGTTCCAACTGCAGGCGAGGCTTTGTGCCGTACAAGAGATGTG
TTGNTGATAGTGAGGCGCTGCTGAAGTCACAGGCGCCTCAGGAGGAGGCAGACGGAGAGATGACGAGGCTGTGCTTATAA
ATTTTTGGAGCCTCGTAGATCACTGCAACTATAGATGCTTGCTACTAATATTTTGTTCACAGATGAGTAGGAACTGATGT
ACTGCAGGAGGGGCTGCTTTCCTGTTACAAGAGGCAGATTGAAACCGCGTTAGTACTCCACAAAACAGGGAGTGGCCGTG
GTTCTTGTCTGGCCATGTACAGTTCAAATATTCTATGTTTCCATTTTCCTCGTCGTGTGTTTGTAATTTCGCTCCCATTG
CGGGAGCGTTCAGAGGTCAATGGCTGTCATGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis