Browse Element(s) Details


Os.53364.1.S1_at

Description gb:AK072279.1
DB_XREF= gi:32982302
TID=Os.53364.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018A16, full insert sequence.
FL= gb:AK072279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4074011/11Heparanase-like protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004566molecular_functionbeta-glucuronidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53364.1.S1_at--852--3731Chr07:24416220..24416244 (25 bp)
CTCATGGGCCCGGTGGTCCTCAAGG
LOC_Os07g40740
Os.53364.1.S1_at--205--9951Chr07:24416151..24416175 (25 bp)
TACGCGCACTGCTCGAGGGAGAAGC
LOC_Os07g40740
Os.53364.1.S1_at--303--7711Chr07:24416123..24416147 (25 bp)
GGGTGACGGTGCTCCTGATCAACCT
LOC_Os07g40740
Os.53364.1.S1_at--888--3791Chr07:24416112..24416136 (25 bp)
CTCCTGATCAACCTGTCGAACGCGA
LOC_Os07g40740
Os.53364.1.S1_at--1021--3311Chr07:24415864..24415888 (25 bp)
CATCGCGTTCGTTAGGTTCACGGAA
LOC_Os07g40740
Os.53364.1.S1_at--1113--6631Chr07:24415849..24415873 (25 bp)
GTTCACGGAATTCAAGGCTCCCGCA
LOC_Os07g40740
Os.53364.1.S1_at--615--1671Chr07:24415814..24415838 (25 bp)
AGCCGCCTAGGCTTAATTAGCACGT
LOC_Os07g40740
Os.53364.1.S1_at--1001--5091Chr07:24415795..24415819 (25 bp)
GCACGTGCTAGTAATCGCGAGTTCG
LOC_Os07g40740
Os.53364.1.S1_at--535--4151Chr07:24415780..24415804 (25 bp)
CGCGAGTTCGTAGATTATGCAGACA
LOC_Os07g40740
Os.53364.1.S1_at--777--3031Chr07:24415725..24415749 (25 bp)
AATCGTTTTTGATAACTCTGAGAAA
LOC_Os07g40740
Os.53364.1.S1_at--689--5991Chr07:24415698..24415722 (25 bp)
GAGACGTGGTTATCAGCTTTGCTTC
LOC_Os07g40740
Target Sequence 
CTCATGGGCCCGGTGGTCCTCAAGGCGGCGACCACCGCCGGCGGCGGAGGTTCGCCGTACCTCCGGTCGTACGCGCACTG
CTCGAGGGAGAAGCCGGGGGTGACGGTGCTCCTGATCAACCTGTCGAACGCGACGGCGTTCGACGTGTCGGTGGCCGGCG
GCGCGCTCGGCGCGGCGCCGTGCGGCGGGCGGAGGGAGGAGTACCACCTGAGCCCGCTCGGCGGCGACATCCGGAGCCAG
GTGGTGCTGCTCAACGGCGAGGCGCTGGCGCTCGGCCCGGGCGGCGAGATCCCCGAGCTCCGGCCGGCCGTCGTCGGCGA
CGGGTGCGCGGCGCCGCTGCGCGTGGCGGCGCGCGGCATCGCGTTCGTTAGGTTCACGGAATTCAAGGCTCCCGCATGCG
CGGCCTAGCCGCCTAGGCTTAATTAGCACGTGCTAGTAATCGCGAGTTCGTAGATTATGCAGACATGAACAACATTTGCA
TTGTATCATGAGTTTAATCGTTTTTGATAACTCTGAGAAATGGAGACGTGGTTATCAGCTTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis