Browse Element(s) Details


Os.53377.1.S1_at

Description gb:AK072348.1
DB_XREF= gi:32982371
TID=Os.53377.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050N03, full insert sequence.
FL= gb:AK072348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2887011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53377.1.S1_at--205--711Chr08:17518064..17518088 (25 bp)
ATGAGGTCCGTCGTGAAGCTGCTGC
LOC_Os08g28870
Os.53377.1.S1_at--186--1691Chr08:17517994..17518018 (25 bp)
AGCCTCTCCTCGTTTGATCACACAA
LOC_Os08g28870
Os.53377.1.S1_at--752--2651Chr08:17517970..17517994 (25 bp)
AAGCCAGCACTGATGAACACACTGA
LOC_Os08g28870
Os.53377.1.S1_at--17--3311Chr08:17517953..17517977 (25 bp)
CACACTGAACAGTAGTACCTCACTT
LOC_Os08g28870
Os.53377.1.S1_at--809--6931Chr08:17517942..17517966 (25 bp)
GTAGTACCTCACTTTAATTAGCAAT
LOC_Os08g28870
Os.53377.1.S1_at--1148--5191Chr08:17517922..17517946 (25 bp)
GCAATTAGCATAATCACTCGCTTCA
LOC_Os08g28870
Os.53377.1.S1_at--82--8751Chr08:17517854..17517878 (25 bp)
TGTACTCAAGTACCCAGCATTAAGG
LOC_Os08g28870
Os.53377.1.S1_at--159--6671Chr08:17517830..17517854 (25 bp)
GTTGAAGCCTCAAGCATGCAATGTA
LOC_Os08g28870
Os.53377.1.S1_at--784--7791Chr08:17517784..17517808 (25 bp)
GGTCCTCTATGTATAGCTCATTCTA
LOC_Os08g28870
Os.53377.1.S1_at--470--2991Chr08:17517744..17517768 (25 bp)
AATGTACTACTACCAGTTTGTCTAA
LOC_Os08g28870
Os.53377.1.S1_at--1136--6831Chr08:17517729..17517753 (25 bp)
GTTTGTCTAAAGTATCAATGCCAAC
LOC_Os08g28870
Target Sequence 
ATGAGGTCCGTCGTGAAGCTGCTGCTGGAGCTCCGGCCGGAGAGCAAGGAGAAGGCCATGGCGGAGGAGAAGCCTCTCCT
CGTTTGATCACACAAAGCCAGCACTGATGAACACACTGAACAGTAGTACCTCACTTTAATTAGCAATTAGCATAATCACT
CGCTTCAAAAATCAGTTAGCATAATCACATTAACAATCAGTAGTAATTAATGTACTCAAGTACCCAGCATTAAGGTTGAA
GCCTCAAGCATGCAATGTAAGCTAGAACTACTTAAGTAAAGGTCCTCTATGTATAGCTCATTCTAGTATTTTCATGGGTT
AATGTACTACTACCAGTTTGTCTAAAGTATCAATGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis