Browse Element(s) Details


Os.53379.1.S1_at

Description gb:AK072352.1
DB_XREF= gi:32982375
TID=Os.53379.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054P03, full insert sequence.
FL= gb:AK072352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3024011/11pentatricopeptide, putative, expressed
LOC_Os12g193501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30190NANA5+17416559..17418145expressed protein
LOC_Os05g30200OsAffx.14882.1.S1_at11/115+17421553..17421987hypothetical protein
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein
LOC_Os05g30220Os.50239.1.S1_a_at11/115+17431777..17436949NB-ARC domain containing protein, expressed
LOC_Os05g30230NANA5+17439254..17440152hypothetical protein
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed
LOC_Os05g30250Os.24873.1.S1_at11/115+17449317..17453520Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30260NANA5+17456267..17459191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30270NANA5+17459507..17465040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30280Os.50390.1.S1_at11/115+17466361..17471435Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53379.1.S1_at--532--9691Chr05:17444442..17444466 (25 bp)
TCACATGGTGCTGCCTGGAACCAAA
LOC_Os05g30240
Os.53379.1.S1_at--1079--1691Chr05:17444461..17444485 (25 bp)
ACCAAAGAGGCTATGGATTGTCTGA
LOC_Os05g30240
Os.53379.1.S1_at--187--1891Chr05:17445255..17445279 (25 bp)
ACGTTTGTGATGGTTTAGTCACCAA
LOC_Os05g30240
Os.53379.1.S1_at--24--7111Chr05:17445272..17445296 (25 bp)
GTCACCAATTGGTCAACTCAGTAAT
LOC_Os05g30240
Os.53379.1.S1_at--651--10212Chr05:17445310..17445334 (25 bp)
TATTTTGTGCTTGTCAACTTTGACC
LOC_Os05g30240
Os.53379.1.S1_at--288--891Chr05:17445364..17445388 (25 bp)
AGGCCATGCTGGTATGCTTGTATGT
LOC_Os05g30240
Os.53379.1.S1_at--694--4931Chr05:17445379..17445403 (25 bp)
GCTTGTATGTATTTCTCACGTGTGG
LOC_Os05g30240
Os.53379.1.S1_at--185--192Chr05:17445389..17445413 (25 bp)
ATTTCTCACGTGTGGGATTCTTTTT
LOC_Os05g30240
Os.53379.1.S1_at--747--6671Chr05:17445416..17445440 (25 bp)
GTTGCTTGGATTAGTTATGCTCTCT
LOC_Os05g30240
Os.53379.1.S1_at--488--6791Chr05:17445429..17445453 (25 bp)
GTTATGCTCTCTATTTACTCACTGC
LOC_Os05g30240
Os.53379.1.S1_at--773--9891Chr05:17445444..17445468 (25 bp)
TACTCACTGCTCCAGTAAACTTCAA
LOC_Os05g30240
Target Sequence 
TCACATGGTGCTGCCTGGAACCAAAGAGGCTATGGATTGTCTGAAGATCAAGAAGATGTAAATCAGCAAGNGGTGCCTCA
TGCTTATGCACGTGTAAGATGAANGATATCTNCATGATGCATACTCAATAAGAGCAACTCANGNTCCTCAAGCATCAGCT
AGNTCAATAGCATTTGGNTTNGGGACTATTTTTCGGAAANGAAATCTTTTGGACNAGGGAAAAATATTGNNGTTANTCAT
TCAACTATGTTAACACTGATTATACGTTTGTGATGGTTTAGTCACCAATTGGTCAACTCAGTAATCATATTGCTAGAATA
TTTTGTGCTTGTCAACTTTGACCTTTTTCCTCTCTCTATTTTCCTGAAAGAAAGGCCATGCTGGTATGCTTGTATGTATT
TCTCACGTGTGGGATTCTTTTTTTGTTGCTTGGATTAGTTATGCTCTCTATTTACTCACTGCTCCAGTAAACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis