Browse Element(s) Details


Os.53399.1.S1_at

Description gb:AK072442.1
DB_XREF= gi:32982465
TID=Os.53399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111L23, full insert sequence.
FL= gb:AK072442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3696010/11choline transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53399.1.S1_at--1091--2071Chr02:22321941..22321965 (25 bp)
ACATATGCTATGCTGAGGATCCCCG
LOC_Os02g36960
Os.53399.1.S1_at--1121--6151Chr02:22321927..22321951 (25 bp)
GAGGATCCCCGTTTAATTCAGAGAT
LOC_Os02g36960
Os.53399.1.S1_at--177--4492Chr09:1038683..1038711 (23 bp)
GCCGGCTTGATCAGTTGCCAAATAC
NONE
Os.53399.1.S1_at--892--8911Chr02:22321760..22321784 (25 bp)
TGACCATTTTTGTCGGTCCATCGAA
LOC_Os02g36960
Os.53399.1.S1_at--263--7791Chr02:22321746..22321770 (25 bp)
GGTCCATCGAAAGTGCTGCTGCAAT
LOC_Os02g36960
Os.53399.1.S1_at--35--9471Chr02:22321704..22321728 (25 bp)
TCTGGAACTTCCTGCGGTCTAAATA
LOC_Os02g36960
Os.53399.1.S1_at--487--51Chr02:22321680..22321704 (25 bp)
ATTGATCTACGGAACCTTTCAGCCT
LOC_Os02g36960
Os.53399.1.S1_at--57--7851Chr02:22321563..22321587 (25 bp)
GGTAGAACTGCAATGCTGGCCTTTC
LOC_Os02g36960
Os.53399.1.S1_at--10--3931Chr02:22321548..22321572 (25 bp)
CTGGCCTTTCTTTGATCTGTATGTA
LOC_Os02g36960
Os.53399.1.S1_at--226--10411Chr02:22321466..22321490 (25 bp)
TTTTGTAACTGACTGAGCCTGCTGC
LOC_Os02g36960
Os.53399.1.S1_at--754--3831Chr02:22321448..22321472 (25 bp)
CTGCTGCCAGCCTCGTGAATGGAAA
NONE
Target Sequence 
ACATATGCTATGCTGAGGATCCCCGTTTAATTCAGAGATGGGATCCTGATTTTTTTGATCAAATGTCAGAAGCACTACAC
CAGCGACTGCAATACCGAAGTGCGCGAGCTCACCAAATACTGAACAGCCGGCTTGATCAGTTGCCAAATACCTCGAGTAT
TTGAATTGCATGTTAAATATTTGACCATTTTTGTCGGTCCATCGAAAGTGCTGCTGCAATTTCCAGAACAAAAAAGTTCT
GGAACTTCCTGCGGTCTAAATATTGATCTACGGAACCTTTCAGCCTCTGAAATATAGAAGAATGAAGTGCCCCAGCAATC
ATGGTGGCCTTCAAAACAACACGATGTTGCCAATCAAGCAGCCATATGTTCATAGTTGGGTAGAACTGCAATGCTGGCCT
TTCTTTGATCTGTATGTATGCAGCTTTGTAGGGAAAACAGTAAAGAAAATCTTAGTCCAGTTGTTGACTTAGGTCTTTTG
TAACTGACTGAGCCTGCTGCCAGCCTCGTGAATGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis