Browse Element(s) Details


Os.53405.1.S1_at

Description gb:AK072470.1
DB_XREF= gi:32982493
TID=Os.53405.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121E15, full insert sequence.
FL= gb:AK072470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5859011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000289biological_processpoly(A) tail shortening
GO:0006397biological_processmRNA processing
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008143molecular_functionpoly(A) binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53405.1.S1_at--609--2331Chr04:34613501..34613525 (25 bp)
AAAGTTGCCAATTGTTCTGAGTCAC
LOC_Os04g58590
Os.53405.1.S1_at--1027--10591Chr04:34613487..34613511 (25 bp)
TTCTGAGTCACAGCCAACAGCTTGG
LOC_Os04g58590
Os.53405.1.S1_at--1012--9911Chr04:34613418..34613442 (25 bp)
TACTGCTGGGTCCAATGCTTCTCAA
LOC_Os04g58590
Os.53405.1.S1_at--446--2911Chr04:34613384..34613408 (25 bp)
AAGGATCATTTTGCACAGTCAGGAG
LOC_Os04g58590
Os.53405.1.S1_at--914--2291Chr04:34613350..34613374 (25 bp)
AAAGGCGTTCAATCGTCTAGCACCA
LOC_Os04g58590
Os.53405.1.S1_at--733--4391Chr04:34613315..34613339 (25 bp)
GCCACTTGTGGCTTGATCTAACTTG
LOC_Os04g58590
Os.53405.1.S1_at--755--1471Chr04:34613285..34613309 (25 bp)
AGAATCTACCTAAGTTTCCCATCAC
LOC_Os04g58590
Os.53405.1.S1_at--73--10071Chr04:34613249..34613273 (25 bp)
TAGTCGTCAACGTTTTCTTTTGTAG
LOC_Os04g58590
Os.53405.1.S1_at--803--51Chr04:34613209..34613233 (25 bp)
ATTGACTGGTTTTCCCATTTGGAGA
LOC_Os04g58590
Os.53405.1.S1_at--727--8851Chr04:34613038..34613062 (25 bp)
TGATGCCAACTGATGACCACTCTGA
LOC_Os04g58590
Os.53405.1.S1_at--912--8071Chr04:34612993..34613017 (25 bp)
GGAGCTTCATGCTATCTGAACTTGT
LOC_Os04g58590
Target Sequence 
AAAGTTGCCAATTGTTCTGAGTCACAGCCAACAGCTTGGGCTGGTCCACCTGGCTTTGAGCCTCATGCCATCTCCAAGAA
ATGTACTGCTGGGTCCAATGCTTCTCAAGCTTGTTCAAAGGATCATTTTGCACAGTCAGGAGGTGGCCACAAAAGGCGTT
CAATCGTCTAGCACCATTCACTTCAGGCCACTTGTGGCTTGATCTAACTTGATGGAAGAATCTACCTAAGTTTCCCATCA
CTTAAGAATTATTAGTCGTCAACGTTTTCTTTTGTAGGGTGATTTCTCTTTAATTGACTGGTTTTCCCATTTGGAGAAAA
GACCATGTCCTAACTTTATTGGGTCAGTACAGTACTTCTTAGAGGTCAGGTTATCTGAGCTAGATGGTAGATGAAAACAA
TGTCAGTGCAATGTAATGGTAAAAACCTCTATGTGGAACCATTGCATGTTTGTTTATGAATCATGATGCCAACTGATGAC
CACTCTGATGAGTGAGAGATGCTTGGTTGGAGCTTCATGCTATCTGAACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis