Browse Element(s) Details


Os.53423.1.S1_at

Description gb:AK072544.1
DB_XREF= gi:32982567
TID=Os.53423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132N16, full insert sequence.
FL= gb:AK072544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5164010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53423.1.S1_at--623--2131Chr02:31617450..31617474 (25 bp)
ACAGATCTCGAGACGGCTAGCAGTT
LOC_Os02g51640
Os.53423.1.S1_at--505--6771Chr02:31617390..31617414 (25 bp)
GTTAAACTGCTTTTGCCTGGGATTC
LOC_Os02g51640
Os.53423.1.S1_at--713--7671Chr02:31617372..31617396 (25 bp)
GGGATTCTTCAGATCAGCTGGGCCA
LOC_Os02g51640
Os.53423.1.S1_at--831--3371Chr02:31617358..31617382 (25 bp)
CAGCTGGGCCAGTTTGAGTCAAGTT
LOC_Os02g51640
Os.53423.1.S1_at--235--4591Chr02:31617190..31617214 (25 bp)
GCGACATGATTCTCCTCAGTTGTAA
LOC_Os02g51640
Os.53423.1.S1_at--589--1551Chr02:31617156..31617180 (25 bp)
AGCTTGCGCCATGTGGTATCTGTAT
LOC_Os02g51640
Os.53423.1.S1_at--245--8771NONE
TGTATGATGTTTCCTGCTCCCAAGC
NONE
Os.53423.1.S1_at--93--1031Chr02:31617048..31617072 (25 bp)
AGGTCTGTTTGCTTACACTGGCTAA
LOC_Os02g51640
Os.53423.1.S1_at--735--5031Chr02:31617006..31617030 (25 bp)
GCAGATTTGCTGTTACTACGTGTAC
LOC_Os02g51640
Os.53423.1.S1_at--221--8751Chr02:31616986..31617010 (25 bp)
TGTACTATCCTTGACTTGCGTGAGC
LOC_Os02g51640
Os.53423.1.S1_at--323--591Chr02:31616955..31616979 (25 bp)
ATGCCTGTATCGCTGTAACCACAAG
LOC_Os02g51640
Target Sequence 
ACAGATCTCGAGACGGCTAGCAGTTCGTTGTTGGGAAAATGAATCTTTCATGGTTGTGCTGTTAAACTGCTTTTGCCTGG
GATTCTTCAGATCAGCTGGGCCAGTTTGAGTCAAGTTGTGCATTGAGATTGGTTGATTGCTAGGAAGATTAGTGGTTATT
GCCAGTCAGGAAGTTTGGTTATAGTGATGGTACTACCTATATGCAGTGTTCAGCATCTTTGTTTGTAAAAATCGTGTGGG
AAGGTCGGAACTCCAAGTTAGCGACATGATTCTCCTCAGTTGTAACTGGCAGTTAGCTTGCGCCATGTGGTATCTGTATG
ATGTTTCCTGCTCCCAAGCATAATGGTGGAAGAACGATGATTTGACTTCTTTTTTTTCTTGCTTGCCGCCCCTCAATGTT
CAGGTCTGTTTGCTTACACTGGCTAACATGTAGTAAGTACTCTGCAGATTTGCTGTTACTACGTGTACTATCCTTGACTT
GCGTGAGCCGGCCGATGCCTGTATCGCTGTAACCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis