Browse Element(s) Details


Os.53443.1.S1_at

Description gb:AK072659.1
DB_XREF= gi:32982682
TID=Os.53443.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132J02, full insert sequence.
FL= gb:AK072659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4138010/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed
LOC_Os12g41300OsAffx.20069.1.S1_at11/1112+25578869..25580708F-box domain containing protein
LOC_Os12g41310OsAffx.32132.1.S1_at11/1112+25580990..25581514RNA recognition motif family protein
LOC_Os12g41320OsAffx.7854.1.S1_at11/1112+25582090..25582524hypothetical protein
LOC_Os12g41320OsAffx.23570.1.S1_x_at1/1112+25582090..25582524hypothetical protein
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53443.1.S1_at--49--7231NONE
GTCGCATCTTTTGGCATGAAGGGCT
NONE
Os.53443.1.S1_at--344--671Chr12:25604433..25604457 (25 bp)
ATGAAGGGCTCATGCGTCACACCAT
LOC_Os12g41380
Os.53443.1.S1_at--389--2171Chr12:25604451..25604475 (25 bp)
ACACCATCTGTTCCATTTCCAGGAT
LOC_Os12g41380
Os.53443.1.S1_at--1017--211Chr12:25604486..25604510 (25 bp)
ATTTGGCAGATGCTTGTGCATGCAA
LOC_Os12g41380
Os.53443.1.S1_at--609--3131Chr12:25604512..25604536 (25 bp)
AATTTTGGAGATGCCTGTTGCCACA
LOC_Os12g41380
Os.53443.1.S1_at--843--4471Chr12:25604524..25604548 (25 bp)
GCCTGTTGCCACATGCCAAATGGAT
LOC_Os12g41380
Os.53443.1.S1_at--686--7371Chr12:25604552..25604576 (25 bp)
GTGACTACCTGATACAACATCTCAA
LOC_Os12g41380
Os.53443.1.S1_at--963--7731Chr12:25604617..25604641 (25 bp)
GGTGGGTTACACATAATCTGCCTCC
LOC_Os12g41380
Os.53443.1.S1_at--1094--3731Chr12:25604651..25604675 (25 bp)
CTCTTGTTCTTTGCCCATGGTGGTA
LOC_Os12g41380
Os.53443.1.S1_at--464--5351Chr12:25604712..25604736 (25 bp)
GAAGACCATGGTGTAGTCACGGGAA
LOC_Os12g41380
Os.53443.1.S1_at--430--8751Chr12:25604738..25604762 (25 bp)
TGTACAGTGTACAGGCCAAGCATAT
LOC_Os12g41380
Target Sequence 
GTCGCATCTTTTGGCATGAAGGGCTCATGCGTCACACCATCTGTTCCATTTCCAGGATGATAAACAAAATTTGGCAGATG
CTTGTGCATGCAAAAATTTTGGAGATGCCTGTTGCCACATGCCAAATGGATGATGTGACTACCTGATACAACATCTCAAC
TGCATGATGGTTGTTGAATTGAAGAAGTAAATGAGTGAAGGTGGGTTACACATAATCTGCCTCCCTCTCCCTTCTCTTGT
TCTTTGCCCATGGTGGTAGTTTTTTTTTTTTTTTTTTTTTCCTTTCATTTTTGGCAGGAAGACCATGGTGTAGTCACGGG
AAGTGTACAGTGTACAGGCCAAGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis