Browse Element(s) Details


Os.53444.1.S1_at

Description gb:AK072661.1
DB_XREF= gi:32982684
TID=Os.53444.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134M13, full insert sequence.
FL= gb:AK072661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4765011/11pathogen induced protein 2-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47670Os.11732.1.S1_a_at11/112+29129182..29135763U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009269biological_processresponse to desiccation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53444.1.S1_at--577--5271Chr02:29108244..29108268 (25 bp)
GAATGTGATAGCAGCAGCCCAGGCA
LOC_Os02g47650
Os.53444.1.S1_at--354--8251Chr02:29108265..29108289 (25 bp)
GGCAGCGAGCCTATATAATTTTCAG
LOC_Os02g47650
Os.53444.1.S1_at--959--8731Chr02:29108312..29108336 (25 bp)
TGTAACCCTTTTTATCTTCTATCTT
LOC_Os02g47650
Os.53444.1.S1_at--962--9811Chr02:29108339..29108363 (25 bp)
TAACATTCGGATTGGCCTTTCTTCG
LOC_Os02g47650
Os.53444.1.S1_at--586--3671Chr02:29108355..29108379 (25 bp)
CTTTCTTCGGTCATCCTAGCAAGAT
LOC_Os02g47650
Os.53444.1.S1_at--551--9851Chr02:29108379..29108403 (25 bp)
TACAATGCAGCATCACCGTGTTGTG
LOC_Os02g47650
Os.53444.1.S1_at--1149--3351Chr02:29108392..29108416 (25 bp)
CACCGTGTTGTGTCATTGTTTACTG
LOC_Os02g47650
Os.53444.1.S1_at--883--2871Chr02:29108475..29108499 (25 bp)
AAGTGGACTTCCGTTTGATGATCTA
LOC_Os02g47650
Os.53444.1.S1_at--428--7211Chr02:29108546..29108570 (25 bp)
GTCGATCTTGTAACCGCTTTGTAAC
LOC_Os02g47650
Os.53444.1.S1_at--976--6511Chr02:29108587..29108611 (25 bp)
GATTTGGTCAGCCTAATCCTTCGGC
LOC_Os02g47650
Os.53444.1.S1_at--1078--6951Chr02:29108666..29108690 (25 bp)
GTAGCACTTGGGTATTGTAACTTTC
LOC_Os02g47650
Target Sequence 
GAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGCTAGTTAATTGTGATACTTGTAACCCTTTT
TATCTTCTATCTTAATAACATTCGGATTGGCCTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTG
TCATTGTTTACTGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAGAAGTGGACT
TCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTCAACAGCTTAATGTCGATCTTGTAACCGCT
TTGTAACCTCCTTTTCTTAATAAGATTTGGTCAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGT
AGTTTGAGAGACTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis