Browse Element(s) Details


Os.53456.1.S1_at

Description gb:AK072726.1
DB_XREF= gi:32982749
TID=Os.53456.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139K02, full insert sequence.
FL= gb:AK072726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3212011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0043269biological_processregulation of ion transport
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53456.1.S1_at--18--9551Chr01:17908525..17908549 (25 bp)
TCTTCAACATCTTCGACCGCGACGG
LOC_Os01g32120
Os.53456.1.S1_at--1117--8391Chr01:17908662..17908686 (25 bp)
GGCCGCATCAGCTTCCAGGAATTCT
LOC_Os01g32120
Os.53456.1.S1_at--685--4951Chr01:17908707..17908731 (25 bp)
GCATTTGACAACATCTTCTCCTGAG
LOC_Os01g32120
Os.53456.1.S1_at--573--9571Chr01:17908720..17908744 (25 bp)
TCTTCTCCTGAGAATATAGCATCAG
LOC_Os01g32120
Os.53456.1.S1_at--359--4971Chr01:17908738..17908762 (25 bp)
GCATCAGTGGCATTCACATGCATCG
LOC_Os01g32120
Os.53456.1.S1_at--442--2091Chr01:17908753..17908777 (25 bp)
ACATGCATCGATCGCGGCTGTTCAT
LOC_Os01g32120
Os.53456.1.S1_at--616--8791Chr01:17908771..17908795 (25 bp)
TGTTCATCAGCCGATCGCTTCGTCA
LOC_Os01g32120
Os.53456.1.S1_at--331--4231Chr01:17908781..17908805 (25 bp)
CCGATCGCTTCGTCAGATGTTTGGG
LOC_Os01g32120
Os.53456.1.S1_at--1018--171Chr01:17908851..17908875 (25 bp)
ATTTAGGTCAGGTGTTCTTCTTCAT
LOC_Os01g32120
Os.53456.1.S1_at--514--9571Chr01:17908866..17908890 (25 bp)
TCTTCTTCATATGTGATCGAGCTCT
LOC_Os01g32120
Os.53456.1.S1_at--502--771Chr01:17908876..17908900 (25 bp)
ATGTGATCGAGCTCTTGTGAATAAC
LOC_Os01g32120
Target Sequence 
TCTTCAACATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGCCCACTCCATGGCCAAGCTCGGCCAC
GCGCTCACCGTCAAGGAGCTCACCGGCATGATCAAGGAAGCCGACACCGACGGCGACGGCCGCATCAGCTTCCAGGAATT
CTCCCGCGCCATCACCGCCGCCGCATTTGACAACATCTTCTCCTGAGAATATAGCATCAGTGGCATTCACATGCATCGAT
CGCGGCTGTTCATCAGCCGATCGCTTCGTCAGATGTTTGGGGGAGATCAGATCAGATCAGAATTCAGAATCAGATCAGTG
GGGTAAATTTAGGTCAGGTGTTCTTCTTCATATGTGATCGAGCTCTTGTGAATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis