Browse Element(s) Details


Os.53470.1.S1_at

Description gb:AK072817.1
DB_XREF= gi:32982840
TID=Os.53470.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141L10, full insert sequence.
FL= gb:AK072817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53470.1.S1_at--895--3291Chr11:3733568..3733592 (25 bp)
CAAATCTCGTCTGCCTCATTGTGGA
LOC_Os11g07430
Os.53470.1.S1_at--751--7771Chr11:3733527..3733551 (25 bp)
GGTGCACATTACGTCGCCGAAGAGG
LOC_Os11g07430
Os.53470.1.S1_at--522--3191Chr11:3733471..3733495 (25 bp)
CAAGGCACTAGTGTCGGTTTGGCGC
LOC_Os11g07430
Os.53470.1.S1_at--789--10871Chr11:3733429..3733453 (25 bp)
TTGGCGACAGCCACATGGATACACT
LOC_Os11g07430
Os.53470.1.S1_at--664--2651Chr11:3733352..3733376 (25 bp)
AAGCCACGACAATGTTGCCAGCGAT
LOC_Os11g07430
Os.53470.1.S1_at--253--5471Chr11:3733289..3733313 (25 bp)
GAACTGGCACTAATTTGTCGCAATC
LOC_Os11g07430
Os.53470.1.S1_at--621--9611Chr11:3733251..3733275 (25 bp)
TCATCTCCCCAAAGTCTGTATGTGT
LOC_Os11g07430
Os.53470.1.S1_at--924--3871Chr11:3733236..3733260 (25 bp)
CTGTATGTGTTAATGGCTTCTCCTG
LOC_Os11g07430
Os.53470.1.S1_at--1151--10791Chr11:3733138..3733162 (25 bp)
TTGTCGTGACAATGGCCGTCTATTC
LOC_Os11g07430
Os.53470.1.S1_at--1002--4491Chr11:3733124..3733148 (25 bp)
GCCGTCTATTCAAAGCCCTTATGGG
LOC_Os11g07430
Os.53470.1.S1_at--770--451Chr11:3733049..3733073 (25 bp)
ATCTAAACTGTCATGTCTGCTCTAC
LOC_Os11g07430
Target Sequence 
CAAATCTCGTCTGCCTCATTGTGGACGAAGAACGCAAACGGGGTGCACATTACGTCGCCGAAGAGGTGGTATGGAAGATC
ATGATGGATACAAGGAGCAAGGCACTAGTGTCGGTTTGGCGCGGCGACGGTCGGTGCCATTGGCGACAGCCACATGGATA
CACTTGTATTCCTGTCAAAATCCCTGACTGCTTTGCTACCTATGTGAGTTATAGCAAAGCCACGACAATGTTGCCAGCGA
TGGTCGACAAGATACCAATTGCAACACCAACTGCAACCGGAACTGGCACTAATTTGTCGCAATCTTTGCCATCCGAGTCA
TCTCCCCAAAGTCTGTATGTGTTAATGGCTTCTCCTGGGGAGATCTTGGTAGCACTTGAAGAGATACCTGGGTTGGATTG
TGATGATTTGCTAACAGCTTATAGCATTCTTTGTCGTGACAATGGCCGTCTATTCAAAGCCCTTATGGGGCTCCCAATGA
GTATGAGGAAGAAATTGTTGCTGATAGAAATTAAGGCTTATCTAAACTGTCATGTCTGCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis