Browse Element(s) Details


Os.53476.1.S1_at

Description gb:AK072873.1
DB_XREF= gi:32982896
TID=Os.53476.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145D16, full insert sequence.
FL= gb:AK072873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6047011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53476.1.S1_at--99--2251Chr03:34322706..34322730 (25 bp)
AAATTGCACTGCAGTTTGCCTCCGG
LOC_Os03g60470
Os.53476.1.S1_at--778--7651Chr03:34322763..34322787 (25 bp)
GGGATTAAGTGTCCATTTACCATAT
LOC_Os03g60470
Os.53476.1.S1_at--1071--8291Chr03:34322968..34322992 (25 bp)
GGCTATATCCGGTTAAATCCGCCGA
LOC_Os03g60470
Os.53476.1.S1_at--793--411Chr03:34322998..34323022 (25 bp)
ATCATCGAACTCTTATTTCCCACAA
LOC_Os03g60470
Os.53476.1.S1_at--159--1651Chr03:34323036..34323060 (25 bp)
AGCCTCATGCACCTAACTAATCACA
LOC_Os03g60470
Os.53476.1.S1_at--873--3731Chr03:34323052..34323076 (25 bp)
CTAATCACATCCATCCTTAGACGAT
LOC_Os03g60470
Os.53476.1.S1_at--762--6331Chr03:34323074..34323098 (25 bp)
GATGCATGCGTGTGGACATTCTTGC
LOC_Os03g60470
Os.53476.1.S1_at--610--1711Chr03:34323106..34323130 (25 bp)
AACAATTAGCCGTGAGAGCCCAAAC
LOC_Os03g60470
Os.53476.1.S1_at--1136--5851Chr03:34323121..34323145 (25 bp)
GAGCCCAAACAACTGAGTACTCCAG
LOC_Os03g60470
Os.53476.1.S1_at--968--6991Chr03:34323137..34323161 (25 bp)
GTACTCCAGCCTACGATTGTCAGGA
LOC_Os03g60470
Os.53476.1.S1_at--1141--7111Chr03:34323155..34323179 (25 bp)
GTCAGGATATTTTCTCATCTAACTT
LOC_Os03g60470
Target Sequence 
AAATTGCACTGCAGTTTGCCTCCGGTTTCTTGTTTGGTTGAAGTGCTATAGCATGATGGGATTAAGTGTCCATTTACCAT
ATATATATATATATATTCATCGAAATATAACCATACGAGATCTTATTTTAAAGATAATTGTAATAAATATAATGGTGTAA
TGGATCACAAATTAGAAAAAAGGTTTAGGAGAAAAAACATTTTGAGCTTGCTAACAGAAAATTAAACCCACCATAAGCAA
TCAGAATAGGCCACATGTGAATGGCTATATCCGGTTAAATCCGCCGAATCCAATCATCGAACTCTTATTTCCCACAAACC
AAACTCATCCAGCCTCATGCACCTAACTAATCACATCCATCCTTAGACGATGCATGCGTGTGGACATTCTTGCCAAAACC
AACAATTAGCCGTGAGAGCCCAAACAACTGAGTACTCCAGCCTACGATTGTCAGGATATTTTCTCATCTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis