Browse Element(s) Details


Os.53483.1.S1_at

Description gb:AK072895.1
DB_XREF= gi:32982918
TID=Os.53483.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148G19, full insert sequence.
FL= gb:AK072895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4523011/11ENTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45249NANA8+28281083..28282271NA

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53483.1.S1_at--819--2211Chr08:28267447..28267471 (25 bp)
ACAAGAAGTTCGACGCCTACACGGC
LOC_Os08g45230
Os.53483.1.S1_at--667--8111Chr08:28267472..28267496 (25 bp)
GGACGACGACTGGATGCAGCACCTG
LOC_Os08g45230
Os.53483.1.S1_at--135--1711Chr08:28267509..28267533 (25 bp)
ACCACCACTACGCTGGAGTACGACG
LOC_Os08g45230
Os.53483.1.S1_at--532--4791Chr08:28267723..28267747 (25 bp)
GCTCCAGGATGCTTGGCGCCGTCAA
LOC_Os08g45230
Os.53483.1.S1_at--122--10691Chr08:28267770..28267794 (25 bp)
TTCCAGAGCTTGTCGCAGCCGGAAC
LOC_Os08g45230
Os.53483.1.S1_at--115--4191Chr08:28267852..28267876 (25 bp)
CCCTCCATTAATTCTATCATTCCAA
LOC_Os08g45230
Os.53483.1.S1_at--631--9711Chr08:28267885..28267909 (25 bp)
TAATTCCGATCCGAGTTTAGTCCAG
LOC_Os08g45230
Os.53483.1.S1_at--1086--6811Chr08:28267899..28267923 (25 bp)
GTTTAGTCCAGCCAGCTAGCTGAAT
LOC_Os08g45230
Os.53483.1.S1_at--1150--5911Chr08:28267928..28267952 (25 bp)
GAGCTTAGCCTAAGCCAGCTAGCTA
LOC_Os08g45230
Os.53483.1.S1_at--1126--10771Chr08:28267962..28267986 (25 bp)
TTGATTTCTTTGGTCCCTTGCTACA
LOC_Os08g45230
Os.53483.1.S1_at--1069--9071Chr08:28267980..28268004 (25 bp)
TGCTACACTCGACTCAAATCAAATG
LOC_Os08g45230
Target Sequence 
ACAAGAAGTTCGACGCCTACACGGCGGACGACGACTGGATGCAGCACCTGCAGGTTCACAACACCACCACTACGCTGGAG
TACGACGACGACCACGACCACGACCACGACTGCCCGAATCATCCTCCTCTCACTACACCCCGCAGCTGGGACGCCCACGA
CGACCACGACTGCCCGAATCATCCTCCTCACACTACACCCCGCAGCTGGGACGCCCACGTCCACGACTTGTCCCTGCTGC
AGCGGCGCGGCCGCCCAGGAACAGATGCCACCTTCTGCTCCAGGATGCTTGGCGCCGTCAACGTCAGCAGCCGGGCATCC
GGCTTCCAGAGCTTGTCGCAGCCGGAACGGAGGTCCGCCAGCAAGAAGCTCCAGCGTCAGCTTTCCATGGAATATTGATC
CCCCCCCCTCCATTAATTCTATCATTCCAACAACAATATAATTCCGATCCGAGTTTAGTCCAGCCAGCTAGCTGAATTGC
AGAGCTTAGCCTAAGCCAGCTAGCTAGTAGCTTCTTTGATTTCTTTGGTCCCTTGCTACACTCGACTCAAATCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis