Browse Element(s) Details


Os.53501.1.S1_at

Description gb:AK072972.1
DB_XREF= gi:32982995
TID=Os.53501.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147E12, full insert sequence.
FL= gb:AK072972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0369011/11serine/threonine-protein kinase receptor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53501.1.S1_at--359--2371Chr01:1517729..1517855 (25 bp)
AAACCGACCTCCTGAATTACACATG
LOC_Os01g03690
Os.53501.1.S1_at--524--131Chr01:1517509..1517870 (25 bp)
ATTACACATGGAAGCTGTCAGAGGA
LOC_Os01g03690
Os.53501.1.S1_at--666--9031Chr01:1517939..1517963 (25 bp)
TGCAGCTCGGGCTGCTGTGCTGCCA
LOC_Os01g03690
Os.53501.1.S1_at--352--8051Chr01:1517976..1518000 (25 bp)
GGACCGGCCGGACATGTACACCGTC
LOC_Os01g03690
Os.53501.1.S1_at--761--751Chr01:1517989..1518013 (25 bp)
ATGTACACCGTCCACCTCATGCTGT
LOC_Os01g03690
Os.53501.1.S1_at--157--6191Chr01:1518199..1518223 (25 bp)
GAGGACGACTCCAGGAACTCCATCT
LOC_Os01g03690
Os.53501.1.S1_at--50--471Chr01:1518220..1518244 (25 bp)
ATCTCGATCTCCTTCACCACTGAAG
LOC_Os01g03690
Os.53501.1.S1_at--755--9931Chr01:1518232..1518256 (25 bp)
TTCACCACTGAAGGCCGGTAAAACA
LOC_Os01g03690
Os.53501.1.S1_at--1145--5191Chr01:1518263..1518287 (25 bp)
GAATTCAACCATGGACAGTGCAAGT
LOC_Os01g03690
Os.53501.1.S1_at--901--10051Chr01:1518303..1518327 (25 bp)
TAGTGTCGGAATTTTTTATCCAAAT
LOC_Os01g03690
Os.53501.1.S1_at--3--3151Chr01:1518370..1518394 (25 bp)
AATTAATTGGCAGTGCATATGCACA
LOC_Os01g03690
Target Sequence 
AAACCGACCTCCTGAATTACACATGGAAGCTGTCAGAGGAAGGGAGGCAGATGGAGATCGTGGACCCGGCGATGGCGGAG
TGGGACGCCGACGAGGCGCGGCTGTGCGTGCAGCTCGGGCTGCTGTGCTGCCAGGCCGTGGTGTCGGACCGGCCGGACAT
GTACACCGTCCACCTCATGCTGTCCAGCGACTCCTTCACGCTGCCCAAGCCCGGCAAGCCGGCGATCCACGGCCGGGTCG
GCCGGTGGATGAGCACCACCACCACGGCGTCCTCCGCCGCCTCCACCGCCAACACGGCCACCACGCTCGGCACCGACACG
ATGACGACGAGGGCGTCGGCGTCGGCGGCGGCGCTGGGCGGCATTGCCGAGGACGACTCCAGGAACTCCATCTCGATCTC
CTTCACCACTGAAGGCCGGTAAAACAAGACAGGAATTCAACCATGGACAGTGCAAGTAGTAGGTTAGATAGATAGTGTCG
GAATTTTTTATCCAAATAATTGTGTTTTGATTGATATGAACAGGAGTACAGTTGCTGTGAATTAATTGGCAGTGCATATG
CACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis