Browse Element(s) Details

Os.53509.1.S1_at

Description

gb:AK073028.1
DB_XREF= gi:32983051
TID=Os.53509.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144H14, full insert sequence.
FL= gb:AK073028.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g28570	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g28540	Os.28943.1.S1_x_at	4/11	7	+	16696890..16700285	retrotransposon protein, putative, unclassified
LOC_Os07g28550	OsAffx.28646.1.S1_at	11/11	7	+	16709218..16709836	hypothetical protein
LOC_Os07g28560	NA	NA	7	+	16711658..16714838	hypothetical protein
LOC_Os07g28570	Os.53509.1.S1_at	11/11	7	+	16721574..16724325	Leucine Rich Repeat family protein, expressed
LOC_Os07g28580	OsAffx.28647.1.S1_at	11/11	7	+	16727042..16727369	hypothetical protein
LOC_Os07g28590	Os.4216.1.S1_a_at	3/11	7	+	16729132..16731003	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590	Os.46314.3.S1_at	2/11	7	+	16729132..16731003	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590	Os.4216.2.S1_x_at	1/11	7	+	16729132..16731003	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590	OsAffx.265.1.S1_at	1/11	7	+	16729132..16731003	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28600	OsAffx.23366.2.S1_s_at	1/11	7	+	16735985..16739552	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28600	OsAffx.24844.1.S1_at	1/11	7	+	16735985..16739552	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28610	Os.8455.1.S1_at	11/11	7	+	16741876..16743814	expressed protein
LOC_Os07g28620	Os.47463.1.S1_x_at	6/11	7	+	16749256..16752952	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28620	Os.14491.2.S1_x_at	5/11	7	+	16749256..16752952	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0006952	biological_process	defense response
GO:0007165	biological_process	signal transduction
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0050832	biological_process	defense response to fungi
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53509.1.S1_at--868--107	1	Chr07:16723776..16723800 (25 bp)	AGGGCATCAACTACAGACACTCAAT	LOC_Os07g28570
Os.53509.1.S1_at--305--153	1	Chr07:16723911..16723935 (25 bp)	AGCAGTCCTGTATCTTGGTATGAGC	LOC_Os07g28570
Os.53509.1.S1_at--159--155	1	Chr07:16723933..16723957 (25 bp)	AGCATAGGGTTCGTAGTGTCTCTCT	LOC_Os07g28570
Os.53509.1.S1_at--424--873	1	Chr07:16723949..16723973 (25 bp)	TGTCTCTCTGGTTGGTGTTTTGCAC	LOC_Os07g28570
Os.53509.1.S1_at--157--743	1	Chr07:16723963..16723987 (25 bp)	GTGTTTTGCACTTTGCTGTTCAGGA	LOC_Os07g28570
Os.53509.1.S1_at--365--807	1	Chr07:16723994..16724018 (25 bp)	GGAGAATCGCATACTTTGTGCTCTT	LOC_Os07g28570
Os.53509.1.S1_at--64--369	1	Chr07:16724007..16724031 (25 bp)	CTTTGTGCTCTTTCATAGGCTATGT	LOC_Os07g28570
Os.53509.1.S1_at--602--285	1	Chr07:16724071..16724095 (25 bp)	AAGTCGAGTGTTACAGGTCCCAAGA	LOC_Os07g28570
Os.53509.1.S1_at--421--543	1	Chr07:16724164..16724188 (25 bp)	GAACCTAAGTTGTTTGTCCTAGCAA	LOC_Os07g28570
Os.53509.1.S1_at--698--475	1	Chr07:16724213..16724237 (25 bp)	GCTGCAAATCGGTTGTCATTTCCTC	LOC_Os07g28570
Os.53509.1.S1_at--1023--333	1	Chr07:16724275..16724299 (25 bp)	CACGGTACTGTAGATGCTTCAGCTA	LOC_Os07g28570

Target Sequence

AGGGCATCAACTACAGACACTCAATGACCAAGAGTACATCTACATCGGCAATCCTGGCCTTTGCGGCCCTCCTCTCCGCA
AGAATTGTGCAATGAGAGGAAGACACGATGAAGTTGACGATGTGTCAGATGATTTAGCAGTCCTGTATCTTGGTATGAGC
ATAGGGTTCGTAGTGTCTCTCTGGTTGGTGTTTTGCACTTTGCTGTTCAGGAAATAATGGAGAATCGCATACTTTGTGCT
CTTTCATAGGCTATGTGACAACATATTTGTGCAGGTGGCGTGCAAGCTGGGCAATAAGTCGAGTGTTACAGGTCCCAAGA
ACAATACTTAAGATCAACTGATAGGAAACTTGGGAGTCATTAATATATGATGTTTTGGACAAGTAAATGAACCTAAGTTG
TTTGTCCTAGCAACAAGTATCTTTTGGACAAGAGTATGCTGCAAATCGGTTGTCATTTCCTCCTTTTTTTGTGTGTTTTC
CTTTTGGGGAAACTTATACACGGTACTGTAGATGCTTCAGCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis