Browse Element(s) Details


Os.53541.1.S1_at

Description gb:AK073198.1
DB_XREF= gi:32983221
TID=Os.53541.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022I15, full insert sequence.
FL= gb:AK073198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4802011/11Peroxidase 45 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47980OsAffx.5142.1.S1_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47980OsAffx.5142.1.S1_x_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47990Os.35344.18.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990Os.35344.3.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990OsAffx.22940.5.S1_x_at3/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g48000OsAffx.15978.1.S1_x_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48000OsAffx.15978.1.S1_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53541.1.S1_at--989--1251Chr06:29036351..29036375 (25 bp)
AGATACGACGGCAGGGTGTCAACCA
LOC_Os06g48020
Os.53541.1.S1_at--1056--1351Chr06:29036375..29036399 (25 bp)
AGAGACAGCGTAGTGCTGCCGCATG
LOC_Os06g48020
Os.53541.1.S1_at--19--9171Chr06:29036391..29036415 (25 bp)
TGCCGCATGCCAACTTCAACCTGGA
LOC_Os06g48020
Os.53541.1.S1_at--423--8951Chr06:29036458..29036479 (22 bp)
TGACATGATCGCTCTCTCAGGTGGG
LOC_Os06g48020
Os.53541.1.S1_at--977--8351Chr06:29036731..29036755 (25 bp)
GGCGGACTGCAGGTTCTTCCAGTAC
LOC_Os06g48020
Os.53541.1.S1_at--750--7891Chr06:29036742..29036766 (25 bp)
GGTTCTTCCAGTACAGGATCGGCGC
LOC_Os06g48020
Os.53541.1.S1_at--189--5091Chr06:29036955..29036979 (25 bp)
GCACCGTCGACTACTACGCGTGGAG
LOC_Os06g48020
Os.53541.1.S1_at--581--4151Chr06:29037071..29037095 (25 bp)
CGCGACTGCAGATTCCCGAATTGAT
LOC_Os06g48020
Os.53541.1.S1_at--1134--5191Chr06:29037088..29037112 (25 bp)
GAATTGATCGGCTAACTCGCACCGT
LOC_Os06g48020
Os.53541.1.S1_at--179--5111Chr06:29037121..29037145 (25 bp)
GCACGGTGCACTACTACTTGTACAT
LOC_Os06g48020
Os.53541.1.S1_at--43--2091Chr06:29037150..29037174 (25 bp)
ACATTCAATCTTGCTCGGTTCATGG
LOC_Os06g48020
Target Sequence 
AGATACGACGGCAGGGTGTCAACCAGAGACAGCGTAGTGCTGCCGCATGCCAACTTCAACCTGGACCAGCTCAACGCTTT
CTTCGCCGGCCTCGGCCTCTCCCAGACTGACATGATCGCTCTCTCAGGTGGGCACACGTTCGGCGCGGCGGACTGCAGGT
TCTTCCAGTACAGGATCGGCGCCGACCCAGCCATGGACCAGGGCTTCGCGGCGCAGCTGCGCAACACCTGCGGCGGCAAC
CCCAACAACTTCGCGTTCCTCAACGGCGCGACGCCGGCGGCGTTCGACAACGCGTACTACCGGGGCCTGCAGCAAGGCAG
GGGGCTCCTCGGCTCCGACCAGGCGCTGCACGCCGACCAGCGGTCGCGCGGCACCGTCGACTACTACGCGTGGAGCCAGA
GCGCCTTCTTCGGCGGCTTCGCCGCCGCCATGACCAGGCTCGGGAGGGTCGGCGTCAAGACGGCGGCCACCGGCGGCGAG
ATACGCCGCGACTGCAGATTCCCGAATTGATCGGCTAACTCGCACCGTACGTGCGTGCACGGTGCACTACTACTTGTACA
TGCAAACATTCAATCTTGCTCGGTTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis