Browse Element(s) Details


Os.53572.1.S1_at

Description gb:AK073356.1
DB_XREF= gi:32983379
TID=Os.53572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028K22, full insert sequence.
FL= gb:AK073356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4762011/11universal stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53572.1.S1_at--431--8951Chr07:28467261..28467285 (25 bp)
TGACTCGTTGATGGCGTCAGGGTCT
LOC_Os07g47620
Os.53572.1.S1_at--88--551Chr07:28467364..28467388 (25 bp)
ATCGCCAACGCGGTAATCGATCGAT
LOC_Os07g47620
Os.53572.1.S1_at--557--3051Chr07:28467378..28467402 (25 bp)
AATCGATCGATCAAACTCTCTCACT
LOC_Os07g47620
Os.53572.1.S1_at--497--3771Chr07:28467395..28467419 (25 bp)
CTCTCACTCTCGCAGATTCTGCAGA
LOC_Os07g47620
Os.53572.1.S1_at--871--1251Chr07:28467408..28467432 (25 bp)
AGATTCTGCAGATTTCCGCACAGGG
LOC_Os07g47620
Os.53572.1.S1_at--1052--10291Chr07:28467420..28467444 (25 bp)
TTTCCGCACAGGGTTTCTGTGGCTA
LOC_Os07g47620
Os.53572.1.S1_at--872--10591Chr07:28467434..28467458 (25 bp)
TTCTGTGGCTAAACGGGCACCTGAT
LOC_Os07g47620
Os.53572.1.S1_at--111--9811Chr07:28467443..28467467 (25 bp)
TAAACGGGCACCTGATTATTGGCAT
LOC_Os07g47620
Os.53572.1.S1_at--635--8252Chr07:28467449..28467473 (25 bp)
GGCACCTGATTATTGGCATTATTGA
LOC_Os07g47620
Os.53572.1.S1_at--898--4931Chr07:28467475..28467499 (25 bp)
GCATTTGGTTGCAGATGCACGCGTT
LOC_Os07g47620
Os.53572.1.S1_at--846--10231Chr07:28467478..28467502 (25 bp)
TTTGGTTGCAGATGCACGCGTTGAT
LOC_Os07g47620
Target Sequence 
TGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCG
TCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGAT
TTCCGCACAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCAGATGCACGCGTTG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis