Browse Element(s) Details


Os.53577.1.S1_at

Description gb:AK073384.1
DB_XREF= gi:32983407
TID=Os.53577.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030B15, full insert sequence.
FL= gb:AK073384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3524011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53577.1.S1_at--900--7551Chr05:20853295..20853319 (25 bp)
GGGCGGTCACCCTGGCCAGGACATT
LOC_Os05g35240
Os.53577.1.S1_at--589--1091Chr05:20853423..20853447 (25 bp)
AGGGCCTTCTCCATGCGGAGGCACC
LOC_Os05g35240
Os.53577.1.S1_at--185--4091Chr05:20853467..20853491 (25 bp)
CGACGGGTACTACTGGAGGATCCAC
LOC_Os05g35240
Os.53577.1.S1_at--951--2871Chr05:20853675..20853699 (25 bp)
AAGGGCGGCAGAATCATGAAGGCTT
LOC_Os05g35240
Os.53577.1.S1_at--1141--5291Chr05:20853692..20853716 (25 bp)
GAAGGCTTGCAAGAAGCTCCTCCGG
LOC_Os05g35240
Os.53577.1.S1_at--783--2591Chr05:20853705..20853729 (25 bp)
AAGCTCCTCCGGCTGTAGTAACAAT
LOC_Os05g35240
Os.53577.1.S1_at--1121--2551Chr05:20853731..20853755 (25 bp)
AACTGCAAGTGTGAGTGTGTGCGTC
LOC_Os05g35240
Os.53577.1.S1_at--848--7471Chr05:20853745..20853769 (25 bp)
GTGTGTGCGTCAATCTGTAAACCTT
LOC_Os05g35240
Os.53577.1.S1_at--246--4751Chr05:20853770..20853794 (25 bp)
GCTGATATATTACTGCCGCGTGTTC
LOC_Os05g35240
Os.53577.1.S1_at--374--1991Chr05:20853781..20853805 (25 bp)
ACTGCCGCGTGTTCCGAGAATGATC
LOC_Os05g35240
Os.53577.1.S1_at--1056--9411Chr05:20853811..20853835 (25 bp)
TCGGGTTCGTCGAGTTAAAATCGCG
LOC_Os05g35240
Target Sequence 
GGGCGGTCACCCTGGCCAGGACATTCTCCACCGGCTCCCACAGGATCTCCTCCTCCTCCAGGTCCGGCGCCGGCGAGAGG
GTCGGCAGGACGGCCGGCGGCGGCGGCGGCCTCCCCGGCGCGGTGAGGAGGGCCTTCTCCATGCGGAGGCACCCCGCCGG
CCTCGGCAAGGGCGACGGGTACTACTGGAGGATCCACGACAACATGGACGGCGACAGTGACGACGACGGCGACAATCCGG
CCGCCGCCGCCGCCGAGGAAGAAGAGAGGGACAAGAAAGAGCAGCTAGCTGAATCCGCCGACGAGAAGAAGAAAGAGCAG
CTAGCCGAAGCCGCCGACGAGAAGGTGTCGGTGACTGCGACGGCGACGCCGAAGAAGAAGAAGGGCGGCAGAATCATGAA
GGCTTGCAAGAAGCTCCTCCGGCTGTAGTAACAATCAACTGCAAGTGTGAGTGTGTGCGTCAATCTGTAAACCTTGCTGA
TATATTACTGCCGCGTGTTCCGAGAATGATCTCGTTTCGGGTTCGTCGAGTTAAAATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis