Browse Element(s) Details


Os.53586.1.S1_at

Description gb:AK102035.1
DB_XREF= gi:32987244
TID=Os.53586.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081C08, full insert sequence.
FL= gb:AK102035.1 gb:AK073421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3966011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os08g414101/11Glycosyl hydrolases family 17 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53586.1.S1_at--550--7855Chr12:7748061..7748080 (20 bp)
GGTATTTACTGCTCCCTCCGTTTCT
NONE
Os.53586.1.S1_at--136--172Chr09:22761950..22761974 (25 bp)
ATTTACTGCTCCCTCCGTTTCTTAT
LOC_Os09g39660
Os.53586.1.S1_at--159--9091Chr09:22761956..22761980 (25 bp)
TGCTCCCTCCGTTTCTTATGTTTTT
LOC_Os09g39660
Os.53586.1.S1_at--403--10351Chr09:22761971..22761995 (25 bp)
TTATGTTTTTATTGTAAGGCGTATT
LOC_Os09g39660
Os.53586.1.S1_at--802--871Chr09:22761987..22762011 (25 bp)
AGGCGTATTTTGTTTCGTTTGATCG
LOC_Os09g39660
Os.53586.1.S1_at--926--8291Chr09:22761988..22762012 (25 bp)
GGCGTATTTTGTTTCGTTTGATCGA
LOC_Os09g39660
Os.53586.1.S1_at--640--4031Chr09:22761990..22762014 (25 bp)
CGTATTTTGTTTCGTTTGATCGACG
LOC_Os09g39660
Os.53586.1.S1_at--357--9391Chr09:22762001..22762025 (25 bp)
TCGTTTGATCGACGATGACTGAAGA
LOC_Os09g39660
Os.53586.1.S1_at--809--10251Chr09:22762004..22762028 (25 bp)
TTTGATCGACGATGACTGAAGAATA
LOC_Os09g39660
Os.53586.1.S1_at--580--5231Chr09:22762024..22762048 (25 bp)
GAATAGCAATTCAAGAGCAATGTTT
LOC_Os09g39660
Os.53586.1.S1_at--151--10031Chr09:22762027..22762051 (25 bp)
TAGCAATTCAAGAGCAATGTTTTTT
LOC_Os09g39660
Target Sequence 
GGTATTTACTGCTCCCTCCGTTTCTTATGTTTTTATTGTAAGGCGTATTTTGTTTCGTTTGATCGACGATGACTGAAGAA
TAGCAATTCAAGAGCAATGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis