Browse Element(s) Details


Os.53599.1.S1_at

Description gb:AK073505.1
DB_XREF= gi:32983528
TID=Os.53599.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence.
FL= gb:AK073505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3565011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35620NANA6+20782545..20783027hypothetical protein
LOC_Os06g35630OsAffx.5019.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630Os.9708.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630OsAffx.11451.4.S1_x_at1/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35639NANA6+20787240..20788926NA
LOC_Os06g35650Os.53599.1.S1_at11/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650OsAffx.11451.4.S1_x_at1/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35660OsAffx.5020.1.S1_at11/116+20811524..20813110Reticuline oxidase precursor, putative
LOC_Os06g35670Os.9858.1.S1_at11/116+20820744..20824188expressed protein
LOC_Os06g35670Os.9858.2.S1_x_at3/116+20820744..20824188expressed protein
LOC_Os06g35690OsAffx.20313.1.S1_x_at4/116+20828124..20828847hypothetical protein
LOC_Os06g35700Os.27507.1.S1_at10/116+20831523..20833494Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700OsAffx.11451.4.S1_x_at1/116+20831523..20833494Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700Os.47789.1.A1_at1/116+20831523..20833494Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53599.1.S1_at--1095--3531Chr06:20807753..20807777 (25 bp)
CATCCTGGAGCCTCACGGCGGGAGA
LOC_Os06g35650
Os.53599.1.S1_at--422--2491Chr06:20807671..20807695 (25 bp)
AACATCCAGTACGTCGCGTTCTGGC
LOC_Os06g35650
Os.53599.1.S1_at--843--5731Chr06:20807617..20807641 (25 bp)
GACTGGATCAAGAACGTGCACGCGT
LOC_Os06g35650
Os.53599.1.S1_at--51--3511Chr06:20807591..20807615 (25 bp)
CATGGAGCCGTTCGTCACCAGCAAC
LOC_Os06g35650
Os.53599.1.S1_at--289--1691Chr06:20807575..20807599 (25 bp)
ACCAGCAACCCGAGGGATGCGTACG
LOC_Os06g35650
Os.53599.1.S1_at--800--7971Chr06:20807561..20807585 (25 bp)
GGATGCGTACGTGAACTACCGCGAC
LOC_Os06g35650
Os.53599.1.S1_at--183--9452Chr05:16654932..16655013 (25 bp)
TCGGCGCGGCCAACTTCAGGAGGCT
NONE
Os.53599.1.S1_at--705--3371Chr06:20807408..20807432 (25 bp)
CAGCGACTACTTCCGGAACGAGCAG
LOC_Os06g35650
Os.53599.1.S1_at--177--4931Chr06:20807372..20807396 (25 bp)
GCTTGTCTCCACCAAGTAGTGATCG
LOC_Os06g35650
Os.53599.1.S1_at--889--8671Chr06:20807319..20807343 (25 bp)
TGTGATAGTTGGTGCATATGCGTGC
LOC_Os06g35650
Os.53599.1.S1_at--619--9871Chr06:20807251..20807275 (25 bp)
TACAGTATTTGTTTCGTGTTGGATC
LOC_Os06g35650
Target Sequence 
CATCCTGGAGCCTCACGGCGGGAGAGTCGGCAGCATCGCCGACGGCAACACGCCGTACCCGCACCGGTCCGGCGTCCTCT
ACAACATCCAGTACGTCGCGTTCTGGCCGACGACGACGGCGACGCCCGCGGTGCCGGACTGGATCAAGAACGTGCACGCG
TTCATGGAGCCGTTCGTCACCAGCAACCCGAGGGATGCGTACGTGAACTACCGCGACCTCGACATCGGCGAGAACGCGGT
GGCCGGCGGCGTGACGAGCTACGAGAACGGCAGGGTGTGGGGGGAGAAGTACTTCGGCGCGGCCAACTTCAGGAGGCTGG
CGCTGACCAAGGGGAAGGTGGACGCCAGCGACTACTTCCGGAACGAGCAGAGCATCCCGCCGCTTGTCTCCACCAAGTAG
TGATCGATTAGATAGCAATGCAGCTGATGTTTCTTGTGATAGTTGGTGCATATGCGTGCGTGCGTGCGTGTCTTGTGTGT
GACAGATTGATAGCTACTGGTATACAGTATTTGTTTCGTGTTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis