Browse Element(s) Details

Os.47789.1.A1_at

Description

gb:BX927793
DB_XREF= gi:41882189
DB_XREF=BX927793
CLONE=p762b05p3
TID=Os.47789.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47789 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35700	1/11	Reticuline oxidase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35650	Os.53599.1.S1_at	11/11	6	+	20807197..20809008	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650	OsAffx.11451.4.S1_x_at	1/11	6	+	20807197..20809008	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35660	OsAffx.5020.1.S1_at	11/11	6	+	20811524..20813110	Reticuline oxidase precursor, putative
LOC_Os06g35670	Os.9858.1.S1_at	11/11	6	+	20820744..20824188	expressed protein
LOC_Os06g35670	Os.9858.2.S1_x_at	3/11	6	+	20820744..20824188	expressed protein
LOC_Os06g35690	OsAffx.20313.1.S1_x_at	4/11	6	+	20828124..20828847	hypothetical protein
LOC_Os06g35700	Os.27507.1.S1_at	10/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	OsAffx.11451.4.S1_x_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	Os.47789.1.A1_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35710	OsAffx.22947.1.S1_x_at	11/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.2.S1_x_at	4/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.3.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.5.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720	NA	NA	6	+	20846326..20848652	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730	Os.38797.1.S1_at	3/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_x_at	2/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_at	1/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009055	molecular_function	electron carrier activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47789.1.A1_at--1092--433	1	NONE	CCATGGCCAGGCAGTGACCGACGAT	NONE
Os.47789.1.A1_at--596--87	1	NONE	ATGGCCAGGCAGTGACCGACGATAC	NONE
Os.47789.1.A1_at--147--845	1	NONE	GGCCAGGCAGTGACCGACGATACTT	NONE
Os.47789.1.A1_at--67--349	1	NONE	CAGGCAGTGACCGACGATACTTCAG	NONE
Os.47789.1.A1_at--161--827	1	NONE	GGCAGTGACCGACGATACTTCAGGA	NONE
Os.47789.1.A1_at--134--111	1	NONE	AGTGACCGACGATACTTCAGGAACG	NONE
Os.47789.1.A1_at--457--893	1	Chr06:20831883..20831905 (22 bp)	TGACCGACGATACTTCAGGAACGAG	LOC_Os06g35700
Os.47789.1.A1_at--980--577	1	NONE	GACGAGCCAATTCAATGTGCTGGCC	NONE
Os.47789.1.A1_at--776--585	1	NONE	GAGCCAATTCAATGTGCTGGCCTAT	NONE
Os.47789.1.A1_at--1110--845	1	NONE	TGGCCTATCCCTCGTCACATAAAAT	NONE
Os.47789.1.A1_at--568--445	1	NONE	GCCTATCCCTCGTCACATAAAATAA	NONE

Target Sequence

CCATGGCCAGGCAGTGACCGACGATACTTCAGGAACGAGCAGAGCATCCCGCCACTTGTCGCCGGGAAAATGACGAGCCA
ATTCAATGTGCTGGCCTATCCCTCGTCACATAAAATAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis