Browse Element(s) Details


Os.536.1.S1_at

Description gb:AK099949.1
DB_XREF= gi:32985158
TID=Os.536.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.18 (P0009G03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123E12, full insert sequence.
FL= gb:AK099949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0584011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.536.1.S1_at--1042--2671Chr01:2799488..2799512 (25 bp)
AAGCTGGCAAACATACTTCACGCGA
LOC_Os01g05840
Os.536.1.S1_at--394--5571Chr01:2799511..2799535 (25 bp)
GAAAGAGCTCTCTAGACGGCTGAAG
LOC_Os01g05840
Os.536.1.S1_at--969--6131Chr01:2799923..2799945 (23 bp)
GAGGGTGCTTCAATTTGCCACCTAC
LOC_Os01g05840
Os.536.1.S1_at--842--2091Chr01:2799944..2799968 (25 bp)
ACATCTTGTGGAAGAGCGTACCCCA
LOC_Os01g05840
Os.536.1.S1_at--549--3471Chr01:2800100..2800124 (25 bp)
CAGGGAGCAGCTACCACTTGCTATG
LOC_Os01g05840
Os.536.1.S1_at--315--751Chr01:2800122..2800146 (25 bp)
ATGTAGGACTGAACCCTCAGCTCAA
LOC_Os01g05840
Os.536.1.S1_at--1067--7371Chr01:2800151..2800175 (25 bp)
GTGACCGGACAATACTTTGCTGACT
LOC_Os01g05840
Os.536.1.S1_at--7--4151Chr01:2800215..2800239 (25 bp)
CGCTGGCGAAGCAACTCTGGGAATT
LOC_Os01g05840
Os.536.1.S1_at--259--5531Chr01:2800244..2800268 (25 bp)
GAAAAGCTGATCAAGTCTTCTTCAA
LOC_Os01g05840
Os.536.1.S1_at--420--8171Chr01:2800384..2800408 (25 bp)
GGAACCTGAAGTATTCTGAACCCTT
LOC_Os01g05840
Os.536.1.S1_at--278--9771Chr01:2800412..2800436 (25 bp)
TAATGTTTCCTTCGGTCATGGCTGA
LOC_Os01g05840
Target Sequence 
AAGCTGGCAAACATACTTCACGCGAAAGAGCTCTCTAGACGGCTGAAGGAAGAAGGAGCGAACATCACTATTAACTGTGT
TCANTCCTGGNATTGATCANTGACCAATTTGATGAGGCACTNCCTTTTTCCTTATGAGGGTGCTTCAATTTGCCACCTAC
ATCTTGTGGAAGAGCGTACCCCAGGGAGCAGCTACCACTTGCTATGTAGGACTGAACCCTCAGCTCAAGGGAGTGACCGG
ACAATACTTTGCTGACTGCAATGTGGAGAAAACTAGCAGATTTGCGAGGAATGACGCGCTGGCGAAGCAACTCTGGGAAT
TCAGCGAAAAGCTGATCAAGTCTTCTTCAAAATGAGAGCCCAAAGCAGGATCATCAGCAGAAAAAAGAAGTGTTCTGATA
CTGTTTGGTTTAATGGCATACTAGTATGTGATGATTGATAAATATGTGTAGCAGCAGTAGTATTAGGAACCTGAAGTATT
CTGAACCCTTTTCTAATGTTTCCTTCGGTCATGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis