Browse Element(s) Details


Os.5360.1.S1_at

Description gb:AK109935.1
DB_XREF= gi:32995144
TID=Os.5360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A07, full insert sequence.
FL= gb:AK109935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2666011/11respiratory burst oxidase protein E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26640NANA9+16161019..16166129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26650Os.31104.1.S1_at11/119+16170154..161747362Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os09g26660Os.5360.1.S1_at11/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26660Os.5360.2.S1_at10/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26670Os.17536.1.S1_at11/119+16199909..16200901expressed protein
LOC_Os09g26680OsAffx.29789.3.S1_x_at10/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.20677.1.S1_at8/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.29789.1.S1_x_at7/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.31885.2.S1_x_at2/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5360.1.S1_at--1036--2351Chr09:16190080..16190100 (21 bp)
AAACGTGCAGAGTCGCCGTGGTTGC
LOC_Os09g26660
Os.5360.1.S1_at--819--3431Chr09:16190116..16190140 (25 bp)
CAGATCGACCTACTGTGCTGTCCTG
LOC_Os09g26660
Os.5360.1.S1_at--725--4271Chr09:16190137..16190161 (25 bp)
CCTGTGTCTTGCTCGTGATGGTCAA
LOC_Os09g26660
Os.5360.1.S1_at--336--4031Chr09:16190168..16190192 (25 bp)
CGTAGTTGTGTGATTGTGTCCCTGA
LOC_Os09g26660
Os.5360.1.S1_at--890--7451Chr09:16190183..16190207 (25 bp)
GTGTCCCTGATCATAAATAGGCCGT
LOC_Os09g26660
Os.5360.1.S1_at--333--4371Chr09:16190251..16190275 (25 bp)
CCACAGCTGTGTACTCCAGTGTTGA
LOC_Os09g26660
Os.5360.1.S1_at--411--6091Chr09:16190316..16190340 (25 bp)
GAGTACGAGTCGAGTCGTCCAGACT
LOC_Os09g26660
Os.5360.1.S1_at--272--1151Chr09:16190328..16190352 (25 bp)
AGTCGTCCAGACTCTAGAGCCTCTT
LOC_Os09g26660
Os.5360.1.S1_at--1112--3751Chr09:16190348..16190372 (25 bp)
CTCTTCCCCTGACGTGTGTATAAAT
LOC_Os09g26660
Os.5360.1.S1_at--743--7051Chr09:16190373..16190397 (25 bp)
GTAAGTTTGCCGGTGGTCTCCAAGG
LOC_Os09g26660
Os.5360.1.S1_at--738--6691Chr09:16190442..16190466 (25 bp)
GTTCCAGGCCGCCATGTAGCCATGT
LOC_Os09g26660
Target Sequence 
AAACGTGCAGAGTCGCCGTGGTTGCTAGCCAGCCGGGCACCAGATCGACCTACTGTGCTGTCCTGTGTCTTGCTCGTGAT
GGTCAAGGATGGCGTAGTTGTGTGATTGTGTCCCTGATCATAAATAGGCCGTGTCGAGGTAGGCAGCGGCGTAGGGGGGG
CAGGTCGAGACCGGTCCACAGCTGTGTACTCCAGTGTTGAAGTTGCTGTGAGTTGTCACGGTGGAGTACATGTGTTGGCG
GAGTACGAGTCGAGTCGTCCAGACTCTAGAGCCTCTTCCCCTGACGTGTGTATAAATGTAAGTTTGCCGGTGGTCTCCAA
GGTCGCCAGGTGGCCGTGCTGTTTCTGCGGCCCCTTGTACCTACCCGTTCCAGGCCGCCATGTAGCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis