Browse Element(s) Details


Os.53612.1.S1_at

Description gb:AK073580.1
DB_XREF= gi:32983603
TID=Os.53612.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047C21, full insert sequence.
FL= gb:AK073580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1445011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14440Os.15946.1.S1_at11/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14440OsAffx.17069.1.S1_at3/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14450Os.53612.1.S1_at11/116+8115250..8118846Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460Os.24295.1.A1_at10/116+8126438..8128338chromosome condensation family protein, putative, expressed
LOC_Os06g14470Os.10007.2.S1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.10007.1.A1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.15454.1.S1_x_at1/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14480Os.47130.4.A1_x_at2/116+8139997..8140254retrotransposon protein, putative, unclassified
LOC_Os06g14490Os.54493.1.S1_at11/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490Os.57121.1.S1_at1/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53612.1.S1_at--59--2271Chr06:8118340..8118364 (25 bp)
AAATAAGCAGGGTCCAGACGACGTG
LOC_Os06g14450
Os.53612.1.S1_at--630--1551Chr06:8118382..8118406 (25 bp)
AGCTTCGACAACACTTGCGCCTTGT
LOC_Os06g14450
Os.53612.1.S1_at--120--9171Chr06:8118397..8118421 (25 bp)
TGCGCCTTGTTATATTACAGCAGGT
LOC_Os06g14450
Os.53612.1.S1_at--597--5011Chr06:8118416..8118440 (25 bp)
GCAGGTTATTCCAGCATATCGGGCA
LOC_Os06g14450
Os.53612.1.S1_at--706--251Chr06:8118431..8118455 (25 bp)
ATATCGGGCATTCGTGGGACGATTT
LOC_Os06g14450
Os.53612.1.S1_at--436--5751Chr06:8118448..8118472 (25 bp)
GACGATTTGGTATGCTTTTGAACTC
LOC_Os06g14450
Os.53612.1.S1_at--477--9771Chr06:8118567..8118591 (25 bp)
TAATGGACGTACTAGGACCTCATGT
LOC_Os06g14450
Os.53612.1.S1_at--328--971Chr06:8118580..8118604 (25 bp)
AGGACCTCATGTTGTCATGCAGTGA
LOC_Os06g14450
Os.53612.1.S1_at--194--3111Chr06:8118635..8118659 (25 bp)
AATAGATCACATTCAACACGGCAAT
LOC_Os06g14450
Os.53612.1.S1_at--39--271Chr06:8118712..8118736 (25 bp)
ATATGAGCCTCTATGACTGGACTAC
LOC_Os06g14450
Os.53612.1.S1_at--29--8791Chr06:8118750..8118774 (25 bp)
TGTTATTTATGTTCTTGCCCGTATG
LOC_Os06g14450
Target Sequence 
AAATAAGCAGGGTCCAGACGACGTGGAAAGTCCCCAACCCTCAGCTTCGACAACACTTGCGCCTTGTTATATTACAGCAG
GTTATTCCAGCATATCGGGCATTCGTGGGACGATTTGGTATGCTTTTGAACTCAAAATTCATAAAATACACTCTTGAGGA
TATAGAGAATAATGTGTTGGACCTATTTGAAGGCTAGGGGTGAGAAGCCAACATGGAAATGTCTAAATAATGGACGTACT
AGGACCTCATGTTGTCATGCAGTGAGTTACAAGTATATTGATCAACGGAAGGTAGAATAGATCACATTCAACACGGCAAT
ATGAAAAATACTTTTGAGACTACTTAATGTAATCGTGTACATATCATGTTATATATGAGCCTCTATGACTGGACTACAAA
TGTTTATCTATGTTATTTATGTTCTTGCCCGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis