Browse Element(s) Details


Os.53672.1.A1_at

Description gb:AK073856.1
DB_XREF= gi:32983879
TID=Os.53672.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075C10, full insert sequence.
FL= gb:AK073856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2735011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27320Os.7755.1.S1_at11/117+15882663..15888337glycosyl hydrolase family 10 protein, putative, expressed
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53672.1.A1_at--464--2331Chr07:15915481..15915505 (25 bp)
AAAGATTCCTCTATACCACGTAGCT
LOC_Os07g27350
Os.53672.1.A1_at--802--4931Chr07:15915556..15915580 (25 bp)
GCATTTCCCTGATGACATTGGTCGG
LOC_Os07g27350
Os.53672.1.A1_at--70--10811Chr07:15915644..15915668 (25 bp)
TTGTTTCCCGCTGATCGAGCAAATC
LOC_Os07g27350
Os.53672.1.A1_at--523--411Chr07:15915666..15915690 (25 bp)
ATCAGGTTCGGTATGATCCGCTCGA
LOC_Os07g27350
Os.53672.1.A1_at--156--10131Chr07:15915710..15915734 (25 bp)
TATGATGTCCCAGGAATCAGCTCCC
LOC_Os07g27350
Os.53672.1.A1_at--446--1591Chr07:15915728..15915752 (25 bp)
AGCTCCCTGAACGTTGTCGTGAGGA
LOC_Os07g27350
Os.53672.1.A1_at--760--491Chr07:15915792..15915816 (25 bp)
ATCGGCACGGGAAAACTCTATCAGA
LOC_Os07g27350
Os.53672.1.A1_at--519--9651Chr07:15915812..15915836 (25 bp)
TCAGATCTCATCTTGTGCCAGAATG
LOC_Os07g27350
Os.53672.1.A1_at--717--1471Chr07:15915831..15915855 (25 bp)
AGAATGTTGTCTTGCCTCCGTGATC
LOC_Os07g27350
Os.53672.1.A1_at--154--9991Chr07:15915924..15915948 (25 bp)
TAGCCAGAGGTGAACCGATCCCTTT
LOC_Os07g27350
Os.53672.1.A1_at--102--5451Chr07:15916001..15916025 (25 bp)
GAACCGTCAAGTATGTGCATTTCCA
LOC_Os07g27350
Target Sequence 
AAAGATTCCTCTATACCACGTAGCTCACAGCAGGGCCGGTGATAAAGGGAATGATTTGAATTTCTCCATCATTCCGCATT
TCCCTGATGACATTGGTCGGCTGAGGGCAGTGATCACTCGAGATTGGGTCAAGAATGCTGTTTCACCCCTTCTTGATTCC
TCCTTGTTTCCCGCTGATCGAGCAAATCAGGTTCGGTATGATCCGCTCGAGAATGTAAGTATTGAGATTTATGATGTCCC
AGGAATCAGCTCCCTGAACGTTGTCGTGAGGAATATCCTCGATGGCGGTGTGAATTCTTCGAGAAGGATTGATCGGCACG
GGAAAACTCTATCAGATCTCATCTTGTGCCAGAATGTTGTCTTGCCTCCGTGATCGCAGATATCTATCTGGTTCTGTAGC
TTCCGACCGGGGCTTTTAGAAGCTTGAAAATTTGGCATGCAAATAGCCAGAGGTGAACCGATCCCTTTACCTTCATGAAG
CTGCATTCGCTTATTGTATGTACCATGAGAAAAATACCAAGAACCGTCAAGTATGTGCATTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53672.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis