Browse Element(s) Details


Os.53676.1.S1_at

Description gb:AK102881.1
DB_XREF= gi:32988090
TID=Os.53676.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112H01, full insert sequence.
FL= gb:AK073868.1 gb:AK102881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2856011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28520Os.46012.3.S1_at4/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.2.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.3.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.27088.1.A1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28530NANA8+17289335..17293458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28540OsAffx.29401.1.S1_at11/118+17294555..17298598NB-ARC domain containing protein
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein
LOC_Os08g28560Os.53676.1.S1_at11/118+17306752..17310881expressed protein
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed
LOC_Os08g28580OsAffx.5967.1.S1_at11/118+17325334..17325579hypothetical protein
LOC_Os08g28590NANA8+17327223..17328560transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53676.1.S1_at--393--8811Chr08:17308763..17308787 (25 bp)
TGTTGGTTACCCTTCAGGTGGCTAC
LOC_Os08g28560
Os.53676.1.S1_at--65--9491Chr08:17308723..17308747 (25 bp)
TCTGACTCGTATCTGCACCAAGGTA
LOC_Os08g28560
Os.53676.1.S1_at--255--8071Chr08:17307237..17307261 (25 bp)
GGAGCAATGCCCTCTATCATATTCC
LOC_Os08g28560
Os.53676.1.S1_at--715--4571Chr08:17307033..17307057 (25 bp)
GCGCGGCAGTACGAAGCAATTCTCT
LOC_Os08g28560
Os.53676.1.S1_at--554--6271Chr08:17306971..17306995 (25 bp)
GATGTCTGATAGCTGCCTTGGATAT
LOC_Os08g28560
Os.53676.1.S1_at--781--9891Chr08:17306902..17306926 (25 bp)
TACTTTCTTTTGTAGTCGCGACCTA
LOC_Os08g28560
Os.53676.1.S1_at--352--1151Chr08:17306889..17306913 (25 bp)
AGTCGCGACCTATGTCTGCTAGGAG
LOC_Os08g28560
Os.53676.1.S1_at--1148--4851Chr08:17306872..17306896 (25 bp)
GCTAGGAGTCTCTACATGTACCGTA
LOC_Os08g28560
Os.53676.1.S1_at--157--7071Chr08:17306833..17306857 (25 bp)
GTAATGTGTACTTCTTCATCCTGTA
LOC_Os08g28560
Os.53676.1.S1_at--1147--7171Chr08:17306775..17306799 (25 bp)
GTCTGTCGGGCTTTCAATACAATCT
LOC_Os08g28560
Os.53676.1.S1_at--179--9851Chr08:17306758..17306782 (25 bp)
TACAATCTGAGTGTCCTCTCTTTAC
LOC_Os08g28560
Target Sequence 
TGTTGGTTACCCTTCAGGTGGCTACCCTCCTGCAGTCTACTCTGACTCGTATCTGCACCAAGGTAGCAGAGTTGCGCGGG
AGCAATGCCCTCTATCATATTCCAATAATGCTGTCACTTGCAGGGAGGATGGGCAAATGAACTGTGAAAATGGAACAGTA
AATATGGAGAAAAGTGCAATGTCCTCAAATAAGATGGCTACTAGTCTACTAAAGAGTTGCGGCAATGTGATGCCATGCAG
AAATATGGAGAGAAGTGGCCCAGCCATGTATAAGGTGGACATGCGCGGCAGTACGAAGCAATTCTCTATGGGCAGCAAGA
TGATGNTGTGTCTGATTGTGTTTGGATGTCTGATAGCTGCCTTGGATATGTTTAGAAATGTTGCACAAAAACAGATGTTT
TCTGTCGTTAGTTTACTTTCTTTTGTAGTCGCGACCTATGTCTGCTAGGAGTCTCTACATGTACCGTAAAATTGCTCTTT
GTGTAATGTGTACTTCTTCATCCTGTAAAAATAGAATCCCAATCAAACTATATATGGTTTGTCTGTCGGGCTTTCAATAC
AATCTGAGTGTCCTCTCTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis