Browse Element(s) Details


Os.53690.1.S1_x_at

Description gb:AK073943.1
DB_XREF= gi:32983966
TID=Os.53690.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075E12, full insert sequence.
FL= gb:AK073943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0588011/11RNA polymerase Rpb1, domain 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53690.1.S1_x_at--838--1171Chr02:2914200..2914224 (25 bp)
AGTACTGATCCTTCTGCGTTATCAA
LOC_Os02g05880
Os.53690.1.S1_x_at--87--9651Chr02:2914128..2914152 (25 bp)
TCAGGGTTTTCATCACGCAGTGTAC
LOC_Os02g05880
Os.53690.1.S1_x_at--732--1311Chr02:2914078..2914102 (25 bp)
AGATGTGATTGGACTGCCTTCTGAA
LOC_Os02g05880
Os.53690.1.S1_x_at--293--7431Chr02:2913973..2913997 (25 bp)
GTGTTTGACCTACAGAGATGGCCAG
LOC_Os02g05880
Os.53690.1.S1_x_at--370--2891Chr02:2913920..2913944 (25 bp)
AAGGTCACACTACCCTGAAAGTCGG
LOC_Os02g05880
Os.53690.1.S1_x_at--163--8291Chr02:2913814..2913838 (25 bp)
GGCATTTCGCGTGTATGTCCATGAA
LOC_Os02g05880
Os.53690.1.S1_x_at--494--7831Chr02:2913781..2913805 (25 bp)
GGTCAAGATCAATCCGCTCATATGC
LOC_Os02g05880
Os.53690.1.S1_x_at--94--9611Chr02:2913764..2913788 (25 bp)
TCATATGCGCACCTTTTGCAGCGGA
LOC_Os02g05880
Os.53690.1.S1_x_at--751--10271Chr02:2913750..2913774 (25 bp)
TTTGCAGCGGACTTTGACGGTGATT
LOC_Os02g05880
Os.53690.1.S1_x_at--275--6611Chr02:2913729..2913753 (25 bp)
GATTGTGTGCACATCTATTATCCAC
LOC_Os02g05880
Os.53690.1.S1_x_at--108--10151Chr02:2913711..2913735 (25 bp)
TATCCACAGTCCCTTGCTGCAAAAG
LOC_Os02g05880
Target Sequence 
AGTACTGATCCTTCTGCGTTATCAACAAAACAATGGCTGGAGAAGATGAGAACATTATTTATCAGCAAAGGGTCAGGGTT
TTCATCACGCAGTGTACTTACTGGAGATCCATATATTGGAGTAGATGTGATTGGACTGCCTTCTGAAGTGGCAAAAAGAA
TCACTTTCGAAGAGCAGGTAACAGACATCAACCTTAACAGGTTGCAAGAGATTGTGGATAAGGGATTGTGTTTGACCTAC
AGAGATGGCCAGGCAACCTATGCCATCACCGTTGGATCCAAAGGTCACACTACCCTGAAAGTCGGACAGACTATCAGTAG
GAGAATTGTTGATGGGGATGTTGTTTTCCTTAACCGTCCACCCAGTACCCACAAGCATTCCCTCCAGGCATTTCGCGTGT
ATGTCCATGAAGACCATACGGTCAAGATCAATCCGCTCATATGCGCACCTTTTGCAGCGGACTTTGACGGTGATTGTGTG
CACATCTATTATCCACAGTCCCTTGCTGCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53690.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis