Browse Element(s) Details


Os.53722.1.S1_at

Description gb:AK099511.1
DB_XREF= gi:32984720
TID=Os.53722.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029F19, full insert sequence.
FL= gb:AK099511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3129011/11ubiquitin-fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53722.1.S1_at--778--6851Chr03:17779449..17779473 (25 bp)
GTTTGAGATCAAGTTCCGGCTGCCG
LOC_Os03g31290
Os.53722.1.S1_at--10--3031Chr03:17779535..17779559 (25 bp)
AATCCATCGTTGCTCAATGGCCTAA
LOC_Os03g31290
Os.53722.1.S1_at--982--8111Chr03:17782101..17782125 (25 bp)
GGACTGTAAATGACCTCAAGCTTAT
LOC_Os03g31290
Os.53722.1.S1_at--480--2671Chr03:17782174..17782198 (25 bp)
AAGCCCAATTTGTGACTTCTCTGGA
LOC_Os03g31290
Os.53722.1.S1_at--653--1231Chr03:17782219..17782243 (25 bp)
AGTTCGTGCTCCTACTTCAGACAAA
LOC_Os03g31290
Os.53722.1.S1_at--788--6531Chr03:17782358..17782382 (25 bp)
GATTTCAGGTGTGGTTGTTCCATCA
LOC_Os03g31290
Os.53722.1.S1_at--581--3671Chr03:17782444..17782468 (25 bp)
CTTTTTTGGCTCTTGCTAGAGTGTT
LOC_Os03g31290
Os.53722.1.S1_at--608--1111Chr03:17782463..17782487 (25 bp)
AGTGTTGTATGATGCCTGAGGCGCT
LOC_Os03g31290
Os.53722.1.S1_at--515--10111Chr03:17782516..17782540 (25 bp)
TATGGGTGGCTCATTGCCCAAAATC
LOC_Os03g31290
Os.53722.1.S1_at--961--2271Chr03:17782536..17782560 (25 bp)
AAATCCTGAGTTGCATCGAGTACAT
LOC_Os03g31290
Os.53722.1.S1_at--27--2271Chr03:17782581..17782605 (25 bp)
AAATCTAAATTCGTTCCATCTCATC
LOC_Os03g31290
Target Sequence 
GTTTGAGATCAAGTTCCGGCTGCCGGACGGCACCGACATCGGGCCCAAGAGGTACCCGGCGGCCTCCACCGTCGCCACGC
TCAAGGAATCCATCGTTGCTCAATGGCCTAAAGCAGATAAGGAAAAGGGCCCAAGGACTGTAAATGACCTCAAGCTTATT
AATGCTGGGAAGATATTGGAGAACAACAAAACCCTTTCAGAATGCAAAAGCCCAATTTGTGACTTCTCTGGATTGACAAC
AATGCATGTCGNAGTTCGTGCTCCTACTTCAGACAAACAGTCCAATAAAATAGTTGCCAAGAAGCCAAAGGATTTCAGGT
GTGGTTGTTCCATCATGTGACAGCTTTGTGAATAGTAGCAGTACAGCGAGGAAGTGTCAGCTATTGAACTCCTCCCCTTT
TTTGGCTCTTGCTAGAGTGTTGTATGATGCCTGAGGCGCTTTCTCCTTTCATTTTTCTTTCACTGTATTATGGGTGGCTC
ATTGCCCAAAATCCTGAGTTGCATCGAGTACATGACTTGAAGTTATTGGTCTAAAATCTAAATTCGTTCCATCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis