Browse Element(s) Details


Os.53725.1.S1_x_at

Description gb:AK099535.1
DB_XREF= gi:32984744
TID=Os.53725.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031N15, full insert sequence.
FL= gb:AK099535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3565011/11expressed protein
LOC_Os10g354361/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53725.1.S1_x_at--527--7511Chr10:18737785..18737809 (25 bp)
GTGGAAGCCATCACCATTAATCCTC
LOC_Os10g35650
Os.53725.1.S1_x_at--510--6391Chr10:18737874..18737898 (25 bp)
GATCGAGCTCGGTTGCATACCAATG
LOC_Os10g35650
Os.53725.1.S1_x_at--177--7153Chr10:18737898..18737922 (25 bp)
GTCTTCTCCTACAATATTCTTCTCA
LOC_Os10g35650
Os.53725.1.S1_x_at--987--10751Chr10:18737959..18737983 (25 bp)
TTGAGCTGCTCCACATGATCATGGC
LOC_Os10g35650
Os.53725.1.S1_x_at--1001--6111Chr10:18738177..18738201 (25 bp)
GAGTGTGTCCAGTAAGGCCTGCTAA
LOC_Os10g35650
Os.53725.1.S1_x_at--240--2951Chr10:18738190..18738214 (25 bp)
AAGGCCTGCTAAGATTCGGAGACCA
LOC_Os10g35650
Os.53725.1.S1_x_at--905--1431Chr10:18738266..18738290 (25 bp)
AGAACTGTTTTGCTCGTGTATATAA
LOC_Os10g35650
Os.53725.1.S1_x_at--899--10151Chr10:18738294..18738318 (25 bp)
TATCTTGGCTCTCGTAGCTAGGGTT
LOC_Os10g35650
Os.53725.1.S1_x_at--297--7771Chr10:18738320..18738344 (25 bp)
GGTGACTCGGGAATTATACTCTATT
LOC_Os10g35650
Os.53725.1.S1_x_at--1056--6271Chr10:18738356..18738380 (25 bp)
GATGTTCTTTTGTGCTTAATATTAA
LOC_Os10g35650
Os.53725.1.S1_x_at--1050--611Chr10:18738382..18738405 (24 bp)
ATGCTACTATATGTGTTTGTTCGGG
LOC_Os10g35650
Target Sequence 
GTGGAAGCCATCACCATTAATCCTCTTCTCAAGGGCCTCTGTGCCGACAAGAGGACGAACGACGCAATAGACATAGTGCT
CTGCAGAATGATCGAGCTCGGTTGCATACCAATGTCTTCTCCTACAATATTCTTCTCAGGGGGCTGTGTGATGAGAACAG
AAGCCAAGAAGCTCTTGAGCTGCTCCACATGATCATGGCTGATGATGGAGGAGGCTGCAGAGTGTGTCCAGTAAGGCCTG
CTAAGATTCGGAGACCAGGATCAGCAGCAAAGGCTCTGAAGTACAAGCTCAACCGGATGAGCAAAAACAGAACTGTTTTG
CTCGTGTATATAAGCCTATCTTGGCTCTCGTAGCTAGGGTTTGGTGACTCGGGAATTATACTCTATTTTTTTATTTTTGA
TGTTCTTTTGTGCTTAATATTAATATGCTACTATATGTGTTTGTTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53725.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis