Browse Element(s) Details

Os.53728.1.S1_at

Description

gb:AK099582.1
DB_XREF= gi:32984791
TID=Os.53728.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041M17, full insert sequence.
FL= gb:AK099582.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g30454	11/11	wall-associated kinase-like 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g30418	Os.28300.2.S2_s_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S1_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S2_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.22573.1.S1_x_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.57460.1.S1_x_at	8/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30434	Os.11197.2.S1_x_at	5/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30434	OsAffx.14464.1.S1_x_at	1/11	9	+	18532125..18534298	Eukaryotic aspartyl protease family protein
LOC_Os09g30438	Os.28300.2.S2_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.22573.1.S1_x_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S2_s_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.28300.2.S1_a_at	11/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30438	Os.57460.1.S1_x_at	8/11	9	+	18534745..18540200	Heat shock protein 82, putative, expressed
LOC_Os09g30442	OsAffx.30100.1.S1_at	11/11	9	+	18541175..18541541	hypothetical protein
LOC_Os09g30446	OsAffx.17968.1.S1_at	11/11	9	+	18542825..18547989	Sodium/hydrogen exchanger family protein
LOC_Os09g30454	Os.53728.1.S1_at	11/11	9	+	18549670..18552850	wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458	OsAffx.30101.1.S1_s_at	11/11	9	+	18557470..18562756	Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462	OsAffx.6454.1.S1_at	11/11	9	+	18563937..18564736	expressed protein
LOC_Os09g30466	Os.13862.1.S1_at	10/11	9	+	18565011..18568120	RNase Z, putative, expressed
LOC_Os09g30474	OsAffx.6455.1.S1_at	11/11	9	+	18568420..18572820	LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478	Os.17123.1.S1_at	11/11	9	+	18575971..18580276	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0009620	biological_process	response to fungi
GO:0009751	biological_process	response to salicylic acid stimulus
GO:0005618	cellular_component	cell wall
GO:0005886	cellular_component	plasma membrane
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53728.1.S1_at--574--861	1	Chr09:18552360..18552384 (25 bp)	TGGTGTCATACTCGTGGAGATGCTC	LOC_Os09g30454
Os.53728.1.S1_at--136--543	1	Chr09:18552393..18552417 (25 bp)	GAAGCCTACTGTTTTTGAATCATCA	LOC_Os09g30454
Os.53728.1.S1_at--1130--75	1	Chr09:18552422..18552446 (25 bp)	ATGTCAGCCTAATTGCACTTTTTAA	LOC_Os09g30454
Os.53728.1.S1_at--14--785	1	Chr09:18552456..18552480 (25 bp)	GGTACAGGACAACATCTACGAGATA	LOC_Os09g30454
Os.53728.1.S1_at--730--13	1	Chr09:18552480..18552504 (25 bp)	ATTAGACCCTCAGGTAATTTCGGAG	LOC_Os09g30454
Os.53728.1.S1_at--837--285	1	Chr09:18552524..18552548 (25 bp)	AAGTCGCGGCGCTAGCATCGGCATG	LOC_Os09g30454
Os.53728.1.S1_at--50--837	1	Chr09:18552616..18552640 (25 bp)	GGCGGTGACATTTTGCAAGGGCTTT	LOC_Os09g30454
Os.53728.1.S1_at--752--287	1	Chr09:18552632..18552656 (25 bp)	AAGGGCTTTCAGCTGAGCTGCACTG	LOC_Os09g30454
Os.53728.1.S1_at--780--595	1	Chr09:18552672..18552696 (25 bp)	GAGCAATACCGACACTACTAGCAAG	LOC_Os09g30454
Os.53728.1.S1_at--962--587	1	Chr09:18552709..18552733 (25 bp)	GAGCGGGATTTTTTGCTATCGTCGA	LOC_Os09g30454
Os.53728.1.S1_at--830--1057	1	Chr09:18552736..18552760 (25 bp)	TTCCCACGGTGATCTTACTACATGT	LOC_Os09g30454

Target Sequence

TGGTGTCATACTCGTGGAGATGCTCACAAGGAAGAAGCCTACTGTTTTTGAATCATCAGATAATGTCAGCCTAATTGCAC
TTTTTAATTTGCTAATGGTACAGGACAACATCTACGAGATATTAGACCCTCAGGTAATTTCGGAGGGCATGGAAAATGTA
AAAGAAGTCGCGGCGCTAGCATCGGCATGCCTAAGATTGAAGGGGGAAGAGAGGCCAACAATGAGGCAAGTGGAGATAAG
GCTGGAAAGGCTGTTAGGCGGTGACATTTTGCAAGGGCTTTCAGCTGAGCTGCACTGTCTACCACCTCAACTGAGCAATA
CCGACACTACTAGCAAGCTATACAACATGGAGCGGGATTTTTTGCTATCGTCGAGCTTCCCACGGTGATCTTACTACATG
T

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis