Browse Element(s) Details


Os.53764.1.S1_at

Description gb:AK099818.1
DB_XREF= gi:32985027
TID=Os.53764.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100F17, full insert sequence.
FL= gb:AK099818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2018011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20150OsAffx.25160.1.S1_at2/113+11361946..11364415hypothetical protein
LOC_Os03g20170Os.35084.1.S1_at11/113+11374815..11377787ABC transporter family protein, expressed
LOC_Os03g20180Os.53764.1.S1_at11/113+11381482..11386939YT521-B-like family protein, expressed
LOC_Os03g20190OsAffx.3279.1.S1_at11/113+11391576..11394321pentatricopeptide, putative
LOC_Os03g20200OsAffx.11342.1.S1_at1/113+11397012..11399660transposon protein, putative, Mutator sub-class
LOC_Os03g20210Os.49973.1.S1_at11/113+11401141..11402638Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20220NANA3+11404087..11404392hypothetical protein
LOC_Os03g20230NANA3+11407790..11408944Eukaryotic aspartyl protease family protein
LOC_Os03g20240OsAffx.3280.1.S1_x_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.3280.1.S1_at11/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_at2/113+11411800..11412165hypothetical protein
LOC_Os03g20240OsAffx.26082.1.S1_x_at1/113+11411800..11412165hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53764.1.S1_at--572--6231Chr03:11386348..11386372 (25 bp)
GATGGCAAGGATCACTACAACTGGT
LOC_Os03g20180
Os.53764.1.S1_at--582--5311Chr03:11386378..11386402 (25 bp)
GAAGGTTGGCTCAGTGCACATCAAG
LOC_Os03g20180
Os.53764.1.S1_at--44--791Chr03:11386407..11386431 (25 bp)
ATGTGGCAGGTGAGCCGTCATCAGA
LOC_Os03g20180
Os.53764.1.S1_at--499--551Chr03:11386449..11386473 (25 bp)
ATGGGCTTCCCTGAGAGTTTAAACG
LOC_Os03g20180
Os.53764.1.S1_at--1012--3471Chr03:11386603..11386627 (25 bp)
CAGGTTTTGCTTTTTGCGGGCATTA
LOC_Os03g20180
Os.53764.1.S1_at--1045--10091Chr03:11386666..11386690 (25 bp)
TAGGCATTTCGCTTTGTTTTTTGGG
LOC_Os03g20180
Os.53764.1.S1_at--198--7691Chr03:11386688..11386712 (25 bp)
GGGTACATAACCTCCAACAGGTCAT
LOC_Os03g20180
Os.53764.1.S1_at--992--10771Chr03:11386745..11386769 (25 bp)
TTGTTGTTATGGCAGGCAGTCCTTT
LOC_Os03g20180
Os.53764.1.S1_at--364--3451Chr03:11386761..11386785 (25 bp)
CAGTCCTTTAGTTTCATCTGCTCAT
LOC_Os03g20180
Os.53764.1.S1_at--521--8091Chr03:11386815..11386839 (25 bp)
GGAGCCATTCATTGTTGACAGCGAC
LOC_Os03g20180
Os.53764.1.S1_at--1134--5631Chr03:11386831..11386855 (25 bp)
GACAGCGACTGGGTTTTGCATTTGG
LOC_Os03g20180
Target Sequence 
GATGGCAAGGATCACTACAACTGGTGTTGTGAAGGTTGGCTCAGTGCACATCAAGGTAAATGTGGCAGGTGAGCCGTCAT
CAGAGATTATAGGTGATGAAAATGGGCTTCCCTGAGAGTTTAAACGAATGGTGCAGAAGGAACGGATGGTGTTAACTGTT
TAGTGGGGCGTGTGTCTCTTTGGGGGTTGGGAGGGAGGGTTGGGTGGTGAGGTGAGGTGAGGTGAGGTCTTAGCTTAATG
ATTAATTGTGTTGGTCAGGTTTTGCTTTTTGCGGGCATTACAGTTCAGTGAGCTTGACATTGAGGTTGCTATTGGGTATA
GGCATTTCGCTTTGTTTTTTGGGTACATAACCTCCAACAGGTCATAGATGTTTTGTGGTGGGAAAAATGTTTCCATTTTG
TTGTTATGGCAGGCAGTCCTTTAGTTTCATCTGCTCATATTTGGTGAGTGAATGATATCAAAGGAGAGGAGCCATTCATT
GTTGACAGCGACTGGGTTTTGCATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis