Browse Element(s) Details


Os.53766.1.S1_at

Description gb:AK099821.1
DB_XREF= gi:32985030
TID=Os.53766.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101A13, full insert sequence.
FL= gb:AK099821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3769011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53766.1.S1_at--203--4131Chr08:23737522..23737546 (25 bp)
CGCACCGCCGGTGGGTCATGATGCT
LOC_Os08g37690
Os.53766.1.S1_at--534--2551Chr08:23737487..23737511 (25 bp)
AACTCCGGGCTCAGAGGAGCAGCAG
LOC_Os08g37690
Os.53766.1.S1_at--444--7611Chr08:23737326..23737350 (25 bp)
GGGCAAGCTCCTCTGAAAACTAACC
LOC_Os08g37690
Os.53766.1.S1_at--1022--4771Chr08:23737320..23737344 (25 bp)
GCTCCTCTGAAAACTAACCGTTTCT
LOC_Os08g37690
Os.53766.1.S1_at--261--5551Chr08:23737277..23737301 (25 bp)
GAAACTGCACATTGGAGGATCAGAT
LOC_Os08g37690
Os.53766.1.S1_at--493--5671Chr08:23737250..23737274 (25 bp)
GACATCATGAAAATCCATCGTTCTA
LOC_Os08g37690
Os.53766.1.S1_at--419--511Chr08:23737234..23737258 (25 bp)
ATCGTTCTACGAAAAAATTCTGCAC
LOC_Os08g37690
Os.53766.1.S1_at--1108--6651Chr08:23737199..23737223 (25 bp)
GTTGCTAGCATCTGGAACATTTCGA
LOC_Os08g37690
Os.53766.1.S1_at--782--2491Chr08:23737104..23737128 (25 bp)
AACTTAGGAATCACTGTTTTCAGAA
LOC_Os08g37690
Os.53766.1.S1_at--145--10831Chr08:23737069..23737093 (25 bp)
TTGTGACTGGTTTGGTTGTGAAGTT
LOC_Os08g37690
Os.53766.1.S1_at--267--7931Chr08:23737034..23737058 (25 bp)
GGATTATCATCACGCAAAATTGGCA
LOC_Os08g37690
Target Sequence 
CGCACCGCCGGTGGGTCATGATGCTGGAGGCCGAGAACTCCGGGCTCAGAGGAGCAGCAGGAGCCGCCGGCTCGGCCAAG
GAAGGCGTCGGCGAGGACGAGGACGAGGACGACGACGGCGGCGCCCGGCGCGGGGCCGCTGCGTGGTGGCTCGCGCTCGC
CGTCTGCGTCGGCATTGCCGGCATCGGCCTCGCCATGGGCAAGCTCCTCTGAAAACTAACCGTTTCTTCACCTTTTTGTT
AAGGGGAAACTGCACATTGGAGGATCAGATCAGACATCATGAAAATCCATCGTTCTACGAAAAAATTCTGCACAAAAAAA
AATGTTGCTAGCATCTGGAACATTTCGATGATTAGGAATCACTTGTAAATGATGAACATGATGAACAGAGAGGGGTGATG
ACTGATGAGAACTGTAGAAACTTAGGAATCACTGTTTTCAGAAGGAAGTTGGGTTGTGACTGGTTTGGTTGTGAAGTTTG
TGTAGATAGGATTATCATCACGCAAAATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis