Browse Element(s) Details


Os.53787.1.S1_at

Description gb:AK100022.1
DB_XREF= gi:32985231
TID=Os.53787.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145I21, full insert sequence.
FL= gb:AK100022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1540011/11Esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15350NANA12+8760825..8766771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15370OsAffx.31751.1.S1_at10/1112+8770406..8772488hypothetical protein
LOC_Os12g15390OsAffx.31752.1.S1_at11/1112+8785203..8785537hypothetical protein
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53787.1.S1_at--904--5331Chr12:8794068..8794092 (25 bp)
GAAGTACATATCACTGCGTGGCCAT
LOC_Os12g15400
Os.53787.1.S1_at--695--10151Chr12:8794097..8794121 (25 bp)
TATCATATTGACTGTGTCGCGGTGC
LOC_Os12g15400
Os.53787.1.S1_at--626--7231Chr12:8794112..8794136 (25 bp)
GTCGCGGTGCGCTTTCAACGAGATT
LOC_Os12g15400
Os.53787.1.S1_at--1001--3251Chr12:8794127..8794151 (25 bp)
CAACGAGATTTTCACCTGAGCTGCG
LOC_Os12g15400
Os.53787.1.S1_at--522--4311Chr12:8794153..8794177 (25 bp)
CCTTCAAGGCTTCGCAATGGTCACT
LOC_Os12g15400
Os.53787.1.S1_at--837--2971Chr12:8794168..8794192 (25 bp)
AATGGTCACTCCACTACTTCATTTA
LOC_Os12g15400
Os.53787.1.S1_at--1154--171Chr12:8794188..8794212 (25 bp)
ATTTACCTCCCATGCTGCACTGAAA
LOC_Os12g15400
Os.53787.1.S1_at--407--6651Chr12:8794373..8794397 (25 bp)
GTTGTTGTATATTTCCACGTTCTAA
LOC_Os12g15400
Os.53787.1.S1_at--407--2831Chr12:8794407..8794431 (25 bp)
AAGTTTTCATGTATTCGCTTCCCTG
LOC_Os12g15400
Os.53787.1.S1_at--343--8711Chr12:8794430..8794454 (25 bp)
TGTCCATAGATCTGCTTGGCCTGAT
LOC_Os12g15400
Os.53787.1.S1_at--309--3291Chr12:8794455..8794479 (25 bp)
CAAAGCGGTTTATTCTGTTTCTGTT
LOC_Os12g15400
Target Sequence 
GAAGTACATATCACTGCGTGGCCATGAATTATCATATTGACTGTGTCGCGGTGCGCTTTCAACGAGATTTTCACCTGAGC
TGCGCCCTTCAAGGCTTCGCAATGGTCACTCCACTACTTCATTTACCTCCCATGCTGCACTGAAACCATTTGATGAAGCA
GGGAGAGGTACACTGGCCGAGTGGTAACATGGGTGCTGAAGAAAGGAGGGGGAGAGAGAGAGATGCTCTGTGATGTAAGT
TGGTTCTTTTATGGCAATTTAGGTTGCCTGGGGTCAAGGATCTGAGTGTAATCTAGTACAGGACGGTTGTTGTATATTTC
CACGTTCTAATGGCATCTCAAGTTTTCATGTATTCGCTTCCCTGTCCATAGATCTGCTTGGCCTGATCAAAGCGGTTTAT
TCTGTTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis